The enzymes LSD1 and Set1A cooperate with the viral protein HBx to establish an active hepatitis B viral chromatin state

Indexación: Web of ScienceWith about 350 million people chronically infected around the world hepatitis B is a major health problem. Template for progeny HBV synthesis is the viral genome, organized as a minichromosome (cccDNA) inside the hepatocyte nucleus. How viral cccDNA gene expression is regulated by its chromatin structure; more importantly, how the modulation of this structure impacts on viral gene expression remains elusive. Here, we found that the enzyme SetDB1 contributes to setting up a repressed cccDNA chromatin state. This repressive state is activated by the histone lysine demethylase-1 (LSD1). Consistently, inhibiting or reducing LSD1 levels led to repression of viral gene expression. This correlates with the transcriptionally repressive mark H3K9 methylation and reduction on the activating marks H3 acetylation and H3K4 methylation on viral promoters. Investigating the importance of viral proteins we found that LSD1 recruitment to viral promoters was dependent on the viral transactivator protein HBx. Moreover, the histone methyltransferase Set1A and HBx are simultaneously bound to the core promoter, and Set1A expression correlates with cccDNA H3K4 methylation. Our results shed light on the mechanisms of HBV regulation mediated by the cccDNA chromatin structure, offering new therapeutic targets to develop drugs for the treatment of chronically infected HBV patients.http://www.nature.com/articles/srep2590

Oxygen insertion into metal carbon bonds: formation of methylperoxo Pd(II) and Pt(II) complexes via photogenerated dinuclear intermediates

Platinum(II) and palladium(II) complexes [M(CH₃)(L)]SbF₆ with substituted terpyridine ligands L undergo light-driven oxygen insertion reactions into metal methyl bonds resulting in methylperoxo complexes [M(OOCH₃)(L)]SbF₆. The oxygen insertion reactions occur readily for complexes with methyl ligands that are activated due to steric interaction with substituents (NH₂, NHMe or CH₃) at the 6,6″-positions on the terpyridine ligand. All complexes exhibit attractive intermolecular π···π or M···M interactions in the solid state and in solution, which lead to excited triplet dinuclear M–M complexes upon irradiation. A mechanism is proposed whereby a dinuclear intermediate is generated upon irradiation that has a weakened M–C bond in the excited state, resulting in the observed oxygen insertion reactions

On holographic three point functions for GKP strings from integrability

Adapting the powerful integrability-based formalism invented previously for the calculation of gluon scattering amplitudes at strong coupling, we develop a method for computing the holographic three point functions for the large spin limit of Gubser-Klebanov- Polyakov (GKP) strings. Although many of the ideas from the gluon scattering problem can be transplanted with minor modifications, the fact that the information of the external states is now encoded in the singularities at the vertex insertion points necessitates several new techniques. Notably, we develop a new generalized Riemann bilinear identity, which allows one to express the area integral in terms of appropriate contour integrals in the presence of such singularities. We also give some general discussions on how semiclassical vertex operators for heavy string states should be constructed systematically from the solutions of the Hamilton-Jacobi equation.Comment: 62 pages;v2 Typos and equation (3.7) corrected. Clarifying remarks added in Section 4.1. Published version;v3 Minor errors found in version 2 are corrected. For explanation of the revision, see Erratum published in http://www.springerlink.com/content/m67055235407vx67/?MUD=M

Wave functions and correlation functions for GKP strings from integrability

We develop a general method of computing the contribution of the vertex operators to the semi-classical correlation functions of heavy string states, based on the state-operator correspondence and the integrable structure of the system. Our method requires only the knowledge of the local behavior of the saddle point configuration around each vertex insertion point and can be applied to cases where the precise forms of the vertex operators are not known. As an important application, we compute the contributions of the vertex operators to the three-point functions of the large spin limit of the Gubser-Klebanov-Polyakov (GKP) strings in $AdS_3$ spacetime, left unevaluated in our previous work [arXiv:1110.3949] which initiated such a study. Combining with the finite part of the action already computed previously and with the newly evaluated divergent part of the action, we obtain finite three-point functions with the expected dependence of the target space boundary coordinates on the dilatation charge and the spin.Comment: 80 pages, 7 figures, v2: typos and minor errors corrected, a reference added, v3: typos and a reference corrected, published versio

Holographic three-point functions for short operators

We consider holographic three-point functions for operators dual to short string states at strong coupling in N=4 super Yang-Mills. We treat the states as point-like as they come in from the boundary but as strings in the interaction region in the bulk. The interaction position is determined by saddle point, which is equivalent to conservation of the canonical momentum for the interacting particles, and leads to conservation of their conformal charges. We further show that for large dimensions the rms size of the interaction region is small compared to the radius of curvature of the AdS space, but still large compared to the string Compton wave-length. Hence, one can approximate the string vertex operators as flat-space vertex operators with a definite momentum, which depends on the conformal and R-charges of the operator. We then argue that the string vertex operator dual to a primary operator is chosen by satisfying a twisted version of Q^L=Q^R, up to spurious terms. This leads to a unique choice for a scalar vertex operator with the appropriate charges at the first massive level. We then comment on some features of the corresponding three-point functions, including the application of these results to Konishi operators.Comment: 24 pages; v2: References added, typos fixed, minor change

More three-point correlators of giant magnons with finite size

In the framework of the semiclassical approach, we compute the normalized structure constants in three-point correlation functions, when two of the vertex operators correspond to heavy string states, while the third vertex corresponds to a light state. This is done for the case when the heavy string states are finite-size giant magnons with one or two angular momenta, and for two different choices of the light state, corresponding to dilaton operator and primary scalar operator. The relevant operators in the dual gauge theory are Tr(F_{\mu\nu}^2 Z^j+...) and Tr(Z^j). We first consider the case of AdS_5 x S^5 and N = 4 super Yang-Mills. Then we extend the obtained results to the gamma-deformed AdS_5 x S^5_\gamma, dual to N = 1 super Yang-Mills theory, arising as an exactly marginal deformation of N = 4 super Yang-Mills.Comment: 14 pages, no figure

Tailoring Three-Point Functions and Integrability III. Classical Tunneling

We compute three-point functions between one large classical operator and two large BPS operators at weak coupling. We consider operators made out of the scalars of N=4 SYM, dual to strings moving in the sphere. The three-point function exponentiates and can be thought of as a classical tunneling process in which the classical string-like operator decays into two classical BPS states. From an Integrability/Condensed Matter point of view, we simplified inner products of spin chain Bethe states in a classical limit corresponding to long wavelength excitations above the ferromagnetic vacuum. As a by-product we solved a new long-range Ising model in the thermodynamic limit.Comment: 37 pages, 10 figure

Correlation functions of three heavy operators - the AdS contribution

We consider operators in N=4 SYM theory which are dual, at strong coupling, to classical strings rotating in S^5. Three point correlation functions of such operators factorize into a universal contribution coming from the AdS part of the string sigma model and a state-dependent S^5 contribution. Consequently a similar factorization arises for the OPE coefficients. In this paper we evaluate the AdS universal factor of the OPE coefficients which is explicitly expressed just in terms of the anomalous dimensions of the three operators.Comment: 49 pages, 3 figures; v.2 references corrected; v3: corrected discussion in section 5, results unchange

Holographic 3-point function at one loop

We explore the recent weak/strong coupling match of three-point functions in the AdS/CFT correspondence for two semi-classical operators and one light chiral primary operator found by Escobedo et al. This match is between the tree-level three-point function with the two semi-classical operators described by coherent states while on the string side the three-point function is found in the Frolov-Tseytlin limit. We compute the one-loop correction to the three-point function on the gauge theory side and compare this to the corresponding correction on the string theory side. We find that the corrections do not match. Finally, we discuss the possibility of further contributions on the gauge theory side that can alter our results.Comment: 24 pages, 2 figures. v2: Typos fixed, Ref. added, figure improved. v3: Several typos and misprints fixed, Ref. updated, figures improved, new section 2.3 added on correction from spin-flipped coherent state, computations on string theory side improve

Ecology of Sleeping: The Microbial and Arthropod Associates of Chimpanzee Beds

The indoor environment created by the construction of homes and other buildings is often considered to be uniquely different from other environments. It is composed of organisms that are less diverse than those of the outdoors and strongly sourced by, or dependent upon, human bodies. Yet, no one has ever compared the composition of species found in contemporary human homes to that of other structures built by mammals, including those of non-human primates. Here we consider the microbes and arthropods found in chimpanzee beds, relative to the surrounding environment (n = 41 and 15 beds, respectively). Based on the study of human homes, we hypothesized that the microbes found in chimpanzee beds would be less diverse than those on nearby branches and leaves and that their beds would be primarily composed of body-associated organisms. However, we found that differences between wet and dry seasons and elevation above sea level explained nearly all of the observed variation in microbial diversity and community structure. While we can identify the presence of a chimpanzee based on the assemblage of bacteria, the dominant signal is that of environmental microbes. We found just four ectoparasitic arthropod specimens, none of which appears to be specialized on chimpanzees or their structures. These results suggest that the life to which chimpanzees are exposed while in their beds is predominately the same as that of the surrounding environment