<i>Sneathiella chinensis</i> gen. nov., sp. nov., a novel marine alphaproteobacterium isolated from coastal sediment in Qingdao, China

The taxonomic position of strain LMG 23452T, which was isolated from coastal sediment from an aquaculture site near Qingdao, China, in 2000, was determined. Strain LMG 23452T comprised Gram-negative, non-spore-forming, motile rods and was found to be a halotolerant, aerobic, chemoheterotroph that produces catalase and oxidase. Comparative 16S rRNA gene sequence analysis revealed that strain LMG 23452T shared approximately 89 % sequence similarity with members of the genera Devosia, Hyphomonas, Ensifer and Chelatococcus, which belong to two different orders within the Alphaproteobacteria. Further phylogenetic analysis of the 16S rRNA gene sequence showed that strain LMG 23452T formed a separate branch within the order Rhizobiales, falling between the genera Devosia and Ensifer of the families Hyphomicrobiaceae and Rhizobiaceae, respectively. Strain LMG 23452T could be differentiated from its closest phylogenetic neighbours on the basis of several phenotypic features, including hydrolysis of the substrates starch and casein and assimilation of the carbohydrates d-glucose, d-mannose, mannitol, maltose and l-arabinose, and chemotaxonomically by the presence of the fatty acids C14 : 0 3-OH, C16 : 1ω11c, C16 : 1 ω5c and C18 : 1ω5c. The major fatty acids detected in strain LMG 23452T were C18 : 1 ω7c, C16 : 0, C19 : 0 cyclo ω8c, C16 : 1 ω7c and C17 : 1ω6c and the G+C content of the genomic DNA was 57.1 mol%. Therefore, the polyphasic data support the placement of strain LMG 23452T within a novel genus and species, for which the name Sneathiella chinensis gen. nov., sp. nov. is proposed. The type strain is LMG 23452T (=CBMAI 737T)

Newly isolated Streptomyces spp. as enantioselective biocatalysts: hydrolysis of 1,2-O-isopropylidene glycerol racemic esters

Aims:To identify microbial strains with esterase activity able to enantioselectively hydrolyse esters of (R,S)-1,2-O-isopropylidene glycerol. Methods and Results:The microbial hydrolysis of various racemic esters of 1,2-O-isopropylidene glycerol (IPG) was attempted by screening among Streptomyces spp. previously selected on the basis of their carboxylesterase activity. The best results were observed in the hydrolysis of butyrate ester and two strains appeared promising as they showed opposite enantioselectivity: Streptomyces sp. 90852 gave predominantly (S)-IPG, while strain 90930 mostly gave the R-alcohol. Streptomyces sp. 90930 was identified as Streptomyces violaceusniger, whereas Streptomyces sp. 90852 is a new species belonging to the Streptomyces violaceus taxon. The carboxylesterase belonging to strain 90852 gave a maximum value of enantiomeric ratio (E) of 14-16. This strain was lyophilized and used as dry mycelium for catalysing the synthesis of isopropylidene glycerol butyrate in heptane showing reaction rate and enantioselectivity (E = 6.6) lower than what observed for the hydrolysis. Conclusions:A new esterase with enantioselective activity towards (R,S)-IPG butyrate has been selected. The best enantioselectivity is similar or even better than the highest reported value in the literature with commercial enzymes. The enzyme is produced by a new species belonging to the S. violaceus taxon. Significance and Impact of the Study:New esterases from streptomycetes can be employed for the enantioselective hydrolysis of chiral esters derived from primary alcohols, not efficiently resolved with commercial enzymes

Below-ground biological responses to pyrogenic organic matter and litter inputs in grasslands

Terrestrial ecosystems are often burned by both managed and wildfires. During a fire, the above-ground biomass that would typically accumulate and be decomposed as litter on the soil surface is combusted. Pyrogenic organic matter (PyOM) remaining after a fire is a considerably more recalcitrant organic input to the soil than fresh litter. The activity and community composition of soil organisms responsible for decomposition of organic matter and nutrient recycling in the soil could thus be affected by altered resource availability caused by frequent fires. We examined the effect of PyOM vs. fresh litter inputs to soil biota at both an annually burned and an infrequently burned tallgrass prairie site by tracing 13C- and 15N-labelled litter and PyOM into growing plant roots, microbial phospholipid fatty acids (PLFAs) and soil nematodes for 1&nbsp;year. Litter-derived C or N was incorporated into microbes, nematodes and roots, while PyOM contributed minimally to soil microbes and plant roots and was not detectable in nematodes. Soil microbial and nematode abundances in the PyOM amended plots did not significantly differ from the bare soil plots, but nematodes were more abundant and microbial PLFAs less abundant in litter-amended plots. The annually burned site had less predator and omnivore nematodes, with increased abundance of microbial feeders and greater microbial uptake of litter C. An alteration of the soil food web structure caused by burning and the removal of the litter layer, along with the accumulation of non-microbially decomposed PyOM in the soil, contributes to the limitation of N cycling in frequently burned ecosystems. A Lay Summary is available for this article

Lysobacter defluvii sp nov., isolated from municipal solid waste

A bacterial isolate obtained from soil from a municipal landfill site in India was characterized using a polyphasic taxonomic approach. The colonies of the isolate were found to be yellow and highly mucoid. Comparative analysis of the 16S rRNA gene sequence showed that this isolate constitutes a distinct phyletic line within the genus Lysobacter, displaying > 3% sequence divergence with respect to recognized Lysobacter species. The generic assignment was confirmed by chemotaxonomic data, which revealed the presence of a fatty acid profile characteristic of members of the genus Lysobacter and consisting of saturated, unsaturated, straight-chain and branched-chain fatty acids as well as iso-C-11:0 3-OH as hydroxylated fatty acid, and the presence of an ubiquinone with eight isoprene units (Q-8) as the predominant respiratory quinone. The genotypic and phenotypic data show that strain IMMIB APB-9(T) merits classification as representing a novel species of the genus Lysobacter, for which the name Lysobacter defluvii sp. nov. is proposed. The type strain is IMMIB APB-9(T) (=CCUG 53152(T) =DSM 18482(T))