Chloroplast_Peru-Galapagos

Arlequin data file for the chloroplast marker

Microsatellites_Peru-Galapagos

Arlequin data file for micorsatellite marker

IMa_Gal_2pops

IMA2 data file using microsatellite dat

Genetic variation for the four categories of <i>Inga vera</i> population studies.

<p>Allelic richness (<i>A_R</i>) per locus rarefied to 38 individuals, gene diversity (<i>H_S</i>), inbreeding coefficient (<i>F_IS</i>) and genetic differentiation (<i>F_ST</i>). Values in the same column followed by distinct letters were statistically different at <i>P</i>≤0.01 for <i>A_R</i> and <i>P</i>≤0.05 for <i>H_S</i>, <i>F_IS</i> and <i>F_ST</i>; All the comparisons were based on 1,000 permutations; Values of <i>F_IS</i> and <i>F_ST</i> in bold were different from zero at <i>P</i><0.05).</p

Location of the study area.

<p>(A) Map of South America highlighting northeastern region of Brazil and original extent of Atlantic rain forest; (B) Original and remaining distribution of the Atlantic rain forest between Alagoas (AL) and Pernambuco (PE) states; (C) Study site map highlighting remnants of the Atlantic rain forest, <i>Inga</i> plantations, and urban areas.</p

Genetic substructure of planted and natural populations <i>Inga vera</i>.

<p>Structure plot generated using BAPS 5.3, displaying only significant admixture (<i>P</i><0.05) between planted and natural populations of adults (A and B) and seedlings (C and D). Number of genetic clusters (K) were assessed after five replicates.</p

Contour map of the 25 ha plot in Kuala Belalong-Brunei Darussalam and location of the 70 subplots sampled in this study.

<p>Habitat types are given for each subplot: valley (green), low slope (dark blue); high slope (light blue); high gully (red); ridge top (orange).</p

Habitat classification.

<p>Habitat classification.</p

Comparison of net relatedness index (NRI) and nearest taxon index (NTI) in different habitats.

<p>NRI and NTI were calculated based on three different phylogenetic hypotheses (Phylomatic: APG classification, Barcode.con: constrained barcode tree, Barcode.uncon: unconstrained barcode tree) in different habitats (hg: high gully, hs: high slope, ls: low slope, rt: ridge top, v: valley). A: Calculation based on sequenced and morphologically identified individuals. B: Calculations based on sequenced individuals only.</p

Comparison of ordinal-level topologies of the trimmed APG tree obtained by Phylomatic (APG) and the barcode tree (<i>rbcL</i> + <i>matK</i>; BRU) obtained from maximum likelihood analysis.

<p>Orders are connected by arrows. *: The order Gnetales represents the gymnosperms, whereas all other orders are angiosperms.</p