The Vehicle, Fall 1985

Vol. 27, No. 1 Table of Contents Satchel AssMichael D. Smithpage 3 PhotoDoug Andersonpage 7 CounselingChristy Dunphypage 8 Grave SiteJay D. Fiskpage 8 Sight-Seeing Outside PhoenixBob Zordanipage 9 PerformanceDan Von Holtenpage 10 NightmareKandy Bellpage 10 Photo (The Loft)Lawrence McGownpage 11 LaboringJanet Gracepage 12 Blood DonorDan Von Holtenpage 13 Photo (Pier)Lawrence McGownpage 14 ExamplesChristopher Albinpage 14 Three PoemsPatrick Peterspage 15 Sometimes I Dream in Cotton CandyKathy Graypage 16 One Day While BoatingF. Link Rapierpage 17 DepartureBob Zordanipage 17 140 Print That\u27s Life Peter Dowlingpage 18 Photo (Around the Bend)Mike Freckerpage 20 Light ConversationDan Hintzpage 22 She Waits For the WorldJim Harrispage 22 HoneyKathy Graypage 23 Photo AlbumPatrick Peterspage 24 Photo (Stairs)Lawrence McGownpage 25 Fallen From Grace to SaturdayF. Link Rapierpage 26 Post MortemF. Link Rapierpage 27 ConfessionJohn Kayserpage 27 Child\u27s PlayChristopher Albinpage 27 Seeking A Friend\u27s Advice on DietingKathy Graypage 28 PhotoDoug Andersonpage 28 She Came Back to MeJim Harrispage 29 Farm BoyDiana Winsonpage 30 DilemmaJanet Wilhelmpage 31 In a Rock or StoneRichard Donnellypage 32 In November He Came To MeJean Kover Chandlerpage 33 EndingChristy Dunphypage 34 The Honor GradEddie Simpsonpage 35 Photo (Thirst)Mike Freckerpage 40https://thekeep.eiu.edu/vehicle/1046/thumbnail.jp

CloVR: A virtual machine for automated and portable sequence analysis from the desktop using cloud computing

Next-generation sequencing technologies have decentralized sequence acquisition, increasing the demand for new bioinformatics tools that are easy to use, portable across multiple platforms, and scalable for high-throughput applications. Cloud computing platforms provide on-demand access to computing infrastructure over the Internet and can be used in combination with custom built virtual machines to distribute pre-packaged with pre-configured software. We describe the Cloud Virtual Resource, CloVR, a new desktop application for push-button automated sequence analysis that can utilize cloud computing resources. CloVR is implemented as a single portable virtual machine (VM) that provides several automated analysis pipelines for microbial genomics, including 16S, whole genome and metagenome sequence analysis. The CloVR VM runs on a personal computer, utilizes local computer resources and requires minimal installation, addressing key challenges in deploying bioinformatics workflows. In addition CloVR supports use of remote cloud computing resources to improve performance for large-scale sequence processing. In a case study, we demonstrate the use of CloVR to automatically process next-generation sequencing data on multiple cloud computing platforms. The CloVR VM and associated architecture lowers the barrier of entry for utilizing complex analysis protocols on both local single- and multi-core computers and cloud systems for high throughput data processing.https://doi.org/10.1186/1471-2105-12-35

Finishing the euchromatic sequence of the human genome

The sequence of the human genome encodes the genetic instructions for human physiology, as well as rich information about human evolution. In 2001, the International Human Genome Sequencing Consortium reported a draft sequence of the euchromatic portion of the human genome. Since then, the international collaboration has worked to convert this draft into a genome sequence with high accuracy and nearly complete coverage. Here, we report the result of this finishing process. The current genome sequence (Build 35) contains 2.85 billion nucleotides interrupted by only 341 gaps. It covers ∼99% of the euchromatic genome and is accurate to an error rate of ∼1 event per 100,000 bases. Many of the remaining euchromatic gaps are associated with segmental duplications and will require focused work with new methods. The near-complete sequence, the first for a vertebrate, greatly improves the precision of biological analyses of the human genome including studies of gene number, birth and death. Notably, the human enome seems to encode only 20,000-25,000 protein-coding genes. The genome sequence reported here should serve as a firm foundation for biomedical research in the decades ahead

Too Big to Care: Promoting Ethics When Ethics Are Not Profitable

Beginning in 2002, Wells Fargo began opening fraudulent accounts for unsuspecting customers. Stakeholders at every level either participated in, ignored, or tolerated the bank’s behavior that defrauded consumers on a massive scale. These unethical and well-documented schemes spanned more than a decade. Using public sources, this case recounts the events and ethical lapses that unfolded over the multiyear investigation of the Wells Fargo fraudulent accounts scandal and illuminates the general systemic failures of corporate culture and governance, public regulation, and market responses to promote ethical business practices. This case provides the opportunity to consider what means for fostering ethical conduct might exist if a corporation can be big enough and rich enough that civil, criminal, regulatory, and market forces cannot deter unethical corporate practices, and if the market does not punish the corporation for a culture that promotes fraud

The Activation of Bovine Plasminogen by PauA Is Not Required for Virulence of Streptococcus uberis

A mutant of Streptococcus uberis carrying a single copy of ISS1 within pauA was unable to activate bovine plasminogen. Contrary to a hypothesis postulated previously, this mutation did not alter the ability of the bacterium to grow in milk or to infect the lactating bovine mammary gland