778 research outputs found
Evolution of the bursting-layer wave during a Type 1 X-ray burst
In a popular scenario due to Heyl, quasi periodic oscillations (QPOs) which
are seen during type 1 X-ray bursts are produced by giant travelling waves in
neutron-star oceans. Piro and Bildsten have proposed that during the burst
cooling the wave in the bursting layer may convert into a deep crustal
interface wave, which would cut off the visible QPOs. This cut-off would help
explain the magnitude of the QPO frequency drift, which is otherwise
overpredicted by a factor of several in Heyl's scenario. In this paper, we
study the coupling between the bursting layer and the deep ocean. The coupling
turns out to be weak and only a small fraction of the surface-wave energy gets
transferred to that of the crustal-interface wave during the burst. Thus the
crustal-interface wave plays no dynamical role during the burst, and no early
QPO cut-off should occur.Comment: 8 pages, submitted to MNRA
Towards a genetic AIDS vaccine
We discuss a recent Nature Medicine publication by Philip Johnson and co-workers (Vector-mediated gene transfer engenders long-lived neutralizing activity and protection against SIV infection in monkeys. Nat. Med. 2009, 15: 901-906) in which an effective HIV-1 vaccine was designed that is based on gene therapy. The introduced gene produces an antibody-like immunoadhesin in the blood that neutralizes the virus
Structure of the mirror nuclei Be and B in a microscopic cluster model
The structure of the mirror nuclei Be and B is studied in a
microscopic and three-cluster model
using a fully antisymmetrized 9-nucleon wave function. The two-nucleon
interaction includes central and spin-orbit components and the Coulomb
potential. The ground state of Be is obtained accurately with the
stochastic variational method, while several particle-unbound states of both
Be and B are investigated with the complex scaling method.The
calculation for Be supports the recent identification for the existence of
two broad states around 6.5 MeV, and predicts the and
states at about 4.5 MeV and 8 MeV, respectively. The
similarity of the calculated spectra of Be and B enables one to
identify unknown spins and parities of the B states. Available data on
electromagnetic moments and elastic electron scatterings are reproduced very
well. The enhancement of the 1 transition of the first excited state in
Be is well accounted for. The calculated density of Be is found to
reproduce the reaction cross section on a Carbon target. The analysis of the
beta decay of Li to Be clearly shows that the wave function of Be
must contain a small component that cannot be described by the simple model. This small component can be well accounted for by extending a
configuration space to include the distortion of the -particle to
and partitions.Comment: 24 page
The A-rich RNA sequences of HIV-1 pol are important for the synthesis of viral cDNA
The bias of A-rich codons in HIV-1 pol is thought to be a record of hypermutations in viral genomes that lack biological functions. Bioinformatic analysis predicted that A-rich sequences are generally associated with minimal local RNA structures. Using codon modifications to reduce the amount of A-rich sequences within HIV-1 genomes, we have reduced the flexibility of RNA sequences in pol to analyze the functional significance of these A-rich ‘structurally poor’ RNA elements in HIV-1 pol. Our data showed that codon modification of HIV-1 sequences led to a suppression of virus infectivity by 5–100-fold, and this defect does not correlate with, viral entry, viral protein expression levels, viral protein profiles or virion packaging of genomic RNA. Codon modification of HIV-1 pol correlated with an enhanced dimer stability of the viral RNA genome, which was associated with a reduction of viral cDNA synthesis both during HIV-1 infection and in a cell free reverse transcription assay. Our data provided direct evidence that the HIV-1 A-rich pol sequence is not merely an evolutionary artifact of enzyme-induced hypermutations, and that HIV-1 has adapted to rely on A-rich RNA sequences to support the synthesis of viral cDNA during reverse transcription, highlighting the utility of using ‘structurally poor’ RNA domains in regulating biological process
Comparing nuclear power trajectories in Germany and the UK: from ‘regimes' to ‘democracies’ in sociotechnical transitions and Discontinuities
This paper focuses on arguably the single most striking contrast in contemporary major energy politics in Europe (and even the developed world as a whole): the starkly differing civil nuclear policies of Germany and the UK. Germany is seeking entirely to phase out nuclear power by 2022. Yet the UK advocates a ‘nuclear renaissance’, promoting the most ambitious new nuclear construction programme in Western Europe.Here,this paper poses a simple yet quite fundamental question: what are the particular divergent conditions most strongly implicated in the contrasting developments in these two countries. With nuclear playing such an iconic role in historical discussions over technological continuity and transformation, answering this may assist in wider understandings of sociotechnical incumbency and discontinuity in the burgeoning field of‘sustainability transitions’. To this end, an ‘abductive’ approach is taken: deploying nine potentially relevant criteria for understanding the different directions pursued in Germany and the UK. Together constituted by 30 parameters spanning literatures related to socio-technical regimes in general as well as nuclear technology in particular, the criteria are divided into those that are ‘internal’ and ‘external’ to the ‘focal regime configuration’ of nuclear power and associated ‘challenger technologies’ like renewables.
It is ‘internal’ criteria that are emphasised in conventional sociotechnical regime theory, with ‘external’ criteria relatively less well explored. Asking under each criterion whether attempted discontinuation of nuclear power would be more likely in Germany or the UK, a clear picture emerges. ‘Internal’ criteria suggest attempted nuclear discontinuation should be more likely in the UK than in Germany– the reverse of what is occurring.
‘External’ criteria are more aligned with observed dynamics –especially those relating to military nuclear commitments and broader ‘qualities of democracy’. Despite many differences of framing concerning exactly what constitutes ‘democracy’, a rich political science literature on this point is unanimous in characterising Germany more positively than the UK. Although based only on a single case,a potentially important question is nonetheless raised as to whether sociotechnical regime theory might usefully give greater attention to the general importance of various aspects of democracy in constituting conditions for significant technological discontinuities and transformations. If so, the policy implications are significant. A number of important areas are identified for future research, including the roles of diverse understandings and specific aspects of democracy and the particular relevance of military nuclear commitments– whose under-discussion in civil nuclear policy literatures raises its own questions of democratic accountability
Anti-HBV treatment induces novel reverse transcriptase mutations with reflective effect on HBV S antigen
The identification of novel reverse-transcriptase (RT) drug-resistance mutations is critical in predicting the probability of success to anti-HBV treatment. Furthermore, due to HBV-RT/HBsAg gene-overlap, they can have an impact on HBsAg-detection and quantification
Conserved presence of G-quadruplex forming sequences in the Long Terminal Repeat Promoter of Lentiviruses
G-quadruplexes (G4s) are secondary structures of nucleic acids that epigenetically regulate cellular processes. In the human immunodeficiency lentivirus 1 (HIV-1), dynamic G4s are located in the unique viral LTR promoter. Folding of HIV-1 LTR G4s inhibits viral transcription; stabilization by G4 ligands intensifies this effect. Cellular proteins modulate viral transcription by inducing/unfolding LTR G4s. We here expanded our investigation on the presence of LTR G4s to all lentiviruses. G4s in the 5'-LTR U3 region were completely conserved in primate lentiviruses. A G4 was also present in a cattle-infecting lentivirus. All other non-primate lentiviruses displayed hints of less stable G4s. In primate lentiviruses, the possibility to fold into G4s was highly conserved among strains. LTR G4 sequences were very similar among phylogenetically related primate viruses, while they increasingly differed in viruses that diverged early from a common ancestor. A strong correlation between primate lentivirus LTR G4s and Sp1/NF\u3baB binding sites was found. All LTR G4s folded: their complexity was assessed by polymerase stop assay. Our data support a role of the lentiviruses 5'-LTR G4 region as control centre of viral transcription, where folding/unfolding of G4s and multiple recruitment of factors based on both sequence and structure may take place
Measurements in two bases are sufficient for certifying high-dimensional entanglement
High-dimensional encoding of quantum information provides a promising method
of transcending current limitations in quantum communication. One of the
central challenges in the pursuit of such an approach is the certification of
high-dimensional entanglement. In particular, it is desirable to do so without
resorting to inefficient full state tomography. Here, we show how carefully
constructed measurements in two bases (one of which is not orthonormal) can be
used to faithfully and efficiently certify bipartite high-dimensional states
and their entanglement for any physical platform. To showcase the practicality
of this approach under realistic conditions, we put it to the test for photons
entangled in their orbital angular momentum. In our experimental setup, we are
able to verify 9-dimensional entanglement for a pair of photons on a
11-dimensional subspace each, at present the highest amount certified without
any assumptions on the state.Comment: 11+14 pages, 2+7 figure
Field test of available methods to measure remotely SOx and NOx emissions from ships
Methods for the determination of ship fuel sulphur content and NOx emission factors based on remote measurements have been compared in the harbour of Rotterdam and compared to direct stack emission measurements on the ferry Stena Hollandica. The methods were selected based on a review of the available literature on ship emission measurements. They were either optical (LIDAR, Differential Optical Absorption Spectroscopy (DOAS), UV camera), combined with model-based estimates of fuel consumption, or based on the so called "sniffer" principle, where SO2 or NOx emission factors are determined from simultaneous measurement of the increase of CO2 and SO2 or NOx concentrations in the plume of the ship compared to the background. The measurements were performed from stations at land, from a boat and from a helicopter. Mobile measurement platforms were found to have important advantages compared to the land-based ones because they allow optimizing the sampling conditions and sampling from ships on the open sea. Although optical methods can provide reliable results it was found that at the state of the art level, the "sniffer" approach is the most convenient technique for determining both SO2 and NOx emission factors remotely. The average random error on the determination of SO2 emission factors comparing two identical instrumental set-ups was 6 %. However, it was found that apparently minor differences in the instrumental characteristics, such as response time, could cause significant differences between the emission factors determined. Direct stack measurements showed that about 14% of the fuel sulphur content was not emitted as SO2. This was supported by the remote measurements and is in agreement with the results of other field studies. S, 1984, Notes on Heavy Fuel Oi
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