The Representation of Tropical Cyclones Within the Global William Putman Non-Hydrostatic Goddard Earth Observing System Model (GEOS-5) at Cloud-Permitting Resolutions

The Goddard Earth Observing System Model (GEOS-S), an earth system model developed in the NASA Global Modeling and Assimilation Office (GMAO), has integrated the non-hydrostatic finite-volume dynamical core on the cubed-sphere grid. The extension to a non-hydrostatic dynamical framework and the quasi-uniform cubed-sphere geometry permits the efficient exploration of global weather and climate modeling at cloud permitting resolutions of 10- to 4-km on today's high performance computing platforms. We have explored a series of incremental increases in global resolution with GEOS-S from irs standard 72-level 27-km resolution (approx.5.5 million cells covering the globe from the surface to 0.1 hPa) down to 3.5-km (approx. 3.6 billion cells)

Toward GEOS-6, A Global Cloud System Resolving Atmospheric Model

NASA is committed to observing and understanding the weather and climate of our home planet through the use of multi-scale modeling systems and space-based observations. Global climate models have evolved to take advantage of the influx of multi- and many-core computing technologies and the availability of large clusters of multi-core microprocessors. GEOS-6 is a next-generation cloud system resolving atmospheric model that will place NASA at the forefront of scientific exploration of our atmosphere and climate. Model simulations with GEOS-6 will produce a realistic representation of our atmosphere on the scale of typical satellite observations, bringing a visual comprehension of model results to a new level among the climate enthusiasts. In preparation for GEOS-6, the agency's flagship Earth System Modeling Framework [JDl] has been enhanced to support cutting-edge high-resolution global climate and weather simulations. Improvements include a cubed-sphere grid that exposes parallelism; a non-hydrostatic finite volume dynamical core, and algorithm designed for co-processor technologies, among others. GEOS-6 represents a fundamental advancement in the capability of global Earth system models. The ability to directly compare global simulations at the resolution of spaceborne satellite images will lead to algorithm improvements and better utilization of space-based observations within the GOES data assimilation syste

Non-Rotating Convective Self-Aggregation in a Limited Area AGCM

We present non-rotating simulations with the Goddard Earth Observing System (GEOS) atmospheric general circulation model (AGCM) in a square limited area domain over uniform sea surface temperature. As in previous studies, convection spontaneously aggregates into humid clusters, driven by a combination of radiative and moisture-convective feedbacks. The aggregation is qualitatively independent of resolution, with horizontal grid spacing from 3 km to 110 km, with both explicit and parameterized deep convection. A budget for the spatial variance of column moist static energy suggests that longwave radiative and surface flux feedbacks help establish aggregation, while the shortwave feedback contributes to its maintenance. Mechanism denial experiments confirm that aggregation does not occur without interactive longwave radiation. Ice cloud radiative effects help support the humid convecting regions, but are not essential for aggregation, while liquid clouds have a negligible effect. Removing the dependence of parameterized convection on tropospheric humidity reduces the intensity of aggregation, but does not prevent the formation of dry regions. In domain sizes less than (5000 km)squared, the aggregation takes the form of a single cluster, while larger domains develop multiple clusters. Larger domains initialized with a single large cluster are unable to maintain them, suggesting an upper size limit. Surface windspeed increases with domain size, implying that maintenance of the boundary layer momentum balance may limit cluster size. As cluster size increases, large boundary layer temperature anomalies develop to maintain the surface pressure gradient, leading to an increase in the depth of parameterized convective heating and an increase in gross moist stability

Tropical Cyclones, Hurricanes, and Climate: NASA's Global Cloud-Scale Simulations and New Observations that Characterize the Lifecycle of Hurricanes

One of the primary interests of Global Change research is the impact of climate changes and climate variability on extreme weather events, such as intense tropical storms and hurricanes. Atmospheric climate models run at resolutions of global weather models have been used to study the impact of climate variability, as seen in sea surface temperatures, on the frequency and intensity of tropical cyclones. NASA's Goddard Earth Observing System Model, version 5 (GEOS-5) in ensembles run at 50 km resolution has been able to reproduce the interannual variations of tropical cyclone frequency seen in nature. This, and other global models, have found it much more difficult to reproduce the interannual changes in intensity, a result that reflects the inability of the models to simulate the intensities of the most extreme storms. Better representation of the structures of cyclones requires much higher resolution models. Such improved representation is also fundamental to making best use of satellite observations. In collaboration with NOAA's Geophysical Fluid Dynamics Laboratory, GEOS-5 now has the capability of running at much higher resolution to better represent cloud-scale resolutions. Global simulations at cloud-permitting resolutions (10- to 3.5-km) allows for the development of realistic tropical cyclones from tropical storm 119 km/hr winds) to category 5 (>249km1hr winds) intensities. GEOS-5 has produced realistic rain-band and eye-wall structures in tropical cyclones that can be directly analyzed against satellite observations. For the first time a global climate model is capable of representing realistic intensity and track variability on a seasonal scale across basins. GEOS-5 is also used in assimilation mode to test the impact of NASA's observations on tropical cyclone forecasts. One such test, for tropical cyclone Nargis in the Indian Ocean in May 2008, showed that observations from Atmospheric Infrared Sounder (AIRS) and the Advanced Microwave Sounding Unit (AMSU-A) on Aqua substantially reduced forecast track errors. Tropical cyclones in the northern Indian Ocean pose serious challenges to operational weather forecasting systems, partly due to their shorter lifespan and more erratic track, compared to those in the Atlantic and the Pacific. SA is also bringing several state of the art instruments in recent field campaigns to peer under the clouds and study the inner workings of the tropical storms. With the Genesis and Rapid Intensification Processes (GRIP) experiment, a NASA Earth science field experiment in 2010 that includes the Global Hawk Unmanned Airborne System (UAS) configured with a suite of in situ and remote sensing instruments that are observing and characterizing the lifecycle of hurricanes, we expect significant improvement in our understanding of the track and intensification processes with the assimilation of the satellite and field campaign observations of meteorological parameters in the numerical prediction models

File Specification for the 7-km GEOS-5 Nature Run, Ganymed Release Non-Hydrostatic 7-km Global Mesoscale Simulation

This document describes the gridded output files produced by a two-year global, non-hydrostatic mesoscale simulation for the period 2005-2006 produced with the non-hydrostatic version of GEOS-5 Atmospheric Global Climate Model (AGCM). In addition to standard meteorological parameters (wind, temperature, moisture, surface pressure), this simulation includes 15 aerosol tracers (dust, sea-salt, sulfate, black and organic carbon), O3, CO and CO2. This model simulation is driven by prescribed sea-surface temperature and sea-ice, daily volcanic and biomass burning emissions, as well as high-resolution inventories of anthropogenic sources. A description of the GEOS-5 model configuration used for this simulation can be found in Putman et al. (2014). The simulation is performed at a horizontal resolution of 7 km using a cubed-sphere horizontal grid with 72 vertical levels, extending up to to 0.01 hPa (approximately 80 km). For user convenience, all data products are generated on two logically rectangular longitude-latitude grids: a full-resolution 0.0625 deg grid that approximately matches the native cubed-sphere resolution, and another 0.5 deg reduced-resolution grid. The majority of the full-resolution data products are instantaneous with some fields being time-averaged. The reduced-resolution datasets are mostly time-averaged, with some fields being instantaneous. Hourly data intervals are used for the reduced-resolution datasets, while 30-minute intervals are used for the full-resolution products. All full-resolution output is on the model's native 72-layer hybrid sigma-pressure vertical grid, while the reduced-resolution output is given on native vertical levels and on 48 pressure surfaces extending up to 0.02 hPa. Section 4 presents additional details on horizontal and vertical grids. Information of the model surface representation can be found in Appendix B. The GEOS-5 product is organized into file collections that are described in detail in Appendix C. Additional details about variables listed in this file specification can be found in a separate document, the GEOS-5 File Specification Variable Definition Glossary. Documentation about the current access methods for products described in this document can be found on the GEOS-5 Nature Run portal: http://gmao.gsfc.nasa.gov/projects/G5NR. Information on the scientific quality of this simulation will appear in a forthcoming NASA Technical Report Series on Global Modeling and Data Assimilation to be available from http://gmao.gsfc.nasa.gov/pubs/tm/

A Global Perspective of Atmospheric CO2 Concentrations

Carbon dioxide (CO2) is the most important greenhouse gas affected by human activity. About half of the CO2 emitted from fossil fuel combustion remains in the atmosphere, contributing to rising temperatures, while the other half is absorbed by natural land and ocean carbon reservoirs. Despite the importance of CO2, many questions remain regarding the processes that control these fluxes and how they may change in response to a changing climate. The Orbiting Carbon Observatory-2 (OCO-2), launched on July 2, 2014, is NASA's first satellite mission designed to provide the global view of atmospheric CO2 needed to better understand both human emissions and natural fluxes. This visualization shows how column CO2 mixing ratio, the quantity observed by OCO-2, varies throughout the year. By observing spatial and temporal gradients in CO2 like those shown, OCO-2 data will improve our understanding of carbon flux estimates. But, CO2 observations can't do that alone. This visualization also shows that column CO2 mixing ratios are strongly affected by large-scale weather systems. In order to fully understand carbon flux processes, OCO-2 observations and atmospheric models will work closely together to determine when and where observed CO2 came from. Together, the combination of high-resolution data and models will guide climate models towards more reliable predictions of future conditions

Carbon assimilation strategies in ultrabasic groundwater: clues from the integrated study of a serpentinization-influenced aquifer

© The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Seyler, L. M., Brazelton, W. J., McLean, C., Putman, L. I., Hyer, A., Kubo, M. D. Y., Hoehler, T., Cardace, D., & Schrenk, M. O. . Carbon assimilation strategies in ultrabasic groundwater: clues from the integrated study of a serpentinization-influenced aquifer. mSystems, 5(2), (2020): e00607-00619, doi: 10.1128/mSystems.00607-19.Serpentinization is a low-temperature metamorphic process by which ultramafic rock chemically reacts with water. Such reactions provide energy and materials that may be harnessed by chemosynthetic microbial communities at hydrothermal springs and in the subsurface. However, the biogeochemistry mediated by microbial populations that inhabit these environments is understudied and complicated by overlapping biotic and abiotic processes. We applied metagenomics, metatranscriptomics, and untargeted metabolomics techniques to environmental samples taken from the Coast Range Ophiolite Microbial Observatory (CROMO), a subsurface observatory consisting of 12 wells drilled into the ultramafic and serpentinite mélange of the Coast Range Ophiolite in California. Using a combination of DNA and RNA sequence data and mass spectrometry data, we found evidence for several carbon fixation and assimilation strategies, including the Calvin-Benson-Bassham cycle, the reverse tricarboxylic acid cycle, the reductive acetyl coenzyme A (acetyl-CoA) pathway, and methylotrophy, in the microbial communities inhabiting the serpentinite-hosted aquifer. Our data also suggest that the microbial inhabitants of CROMO use products of the serpentinization process, including methane and formate, as carbon sources in a hyperalkaline environment where dissolved inorganic carbon is unavailable.We thank McLaughlin Reserve, in particular Paul Aigner and Cathy Koehler, for hosting sampling at CROMO and providing access to the wells, A. Daniel Jones and Anthony Schilmiller for their advice regarding metabolite extraction and mass spectrometry, Elizabeth Kujawinski for her guidance in metabolomics data analysis and interpretation, and Julia McGonigle, Christopher Thornton, and Katrina Twing for assistance with metagenomic and computational analyses

Tropical Cyclones in the 7-km NASA Global Nature Run for Use in Observing System Simulation Experiments

The National Aeronautics and Space Administration (NASA) Nature Run (NR), released for use in Observing System Simulation Experiments (OSSEs), is a 2-year long global non-hydrostatic free-running simulation at a horizontal resolution of 7 km, forced by observed sea-surface temperatures (SSTs) and sea ice, and inclusive of interactive aerosols and trace gases. This article evaluates the NR with respect to tropical cyclone (TC) activity. It is emphasized that to serve as a NR, a long-term simulation must be able to produce realistic TCs, which arise out of realistic large-scale forcings. The presence in the NR of the realistic, relevant dynamical features over the African Monsoon region and the tropical Atlantic is confirmed, along with realistic African Easterly Wave activity. The NR Atlantic TC seasons, produced with 2005 and 2006 SSTs, show interannual variability consistent with observations, with much stronger activity in 2005. An investigation of TC activity over all the other basins (eastern and western North Pacific, North and South Indian Ocean, and Australian region), together with relevant elements of the atmospheric circulation, such as, for example, the Somali Jet and westerly bursts, reveals that the model captures the fundamental aspects of TC seasons in every basin, producing realistic number of TCs with realistic tracks, life spans and structures. This confirms that the NASA NR is a very suitable tool for OSSEs targeting TCs and represents an improvement with respect to previous long simulations that have served the global atmospheric OSSE community

Global Cloud-Resolving Models

Global cloud-resolving models (GCRMs) are a new category of atmospheric global models designed to solve different flavors of the nonhydrostatic equations through the use of kilometer-scale global meshes. GCRMs make it possible to explicitly simulate deep convection, thereby avoiding the need for cumulus parameterization and allowing for clouds to be resolved by microphysical models responding to grid-scale forcing. GCRMs require high-resolution discretization over the globe, for which a variety of mesh structures have been proposed and employed. The first GCRM was constructed 15 years ago, and in recent years, other groups have also begun adopting this approach, enabling the first intercomparison studies of such models. Because conventional general circulation models (GCMs) suffer from large biases associated with cumulus parameterization, GCRMs are attractive tools for researchers studying global weather and climate. In this review, GCRMs are described, with some emphasis on their historical development and the associated literature documenting their use. The advantages of GCRMs are presented, and currently existing GCRMs are listed and described. Future prospects for GCRMs are also presented in the final section

Air-Sea Interactions in a High-Resolution Ocean-Atmosphere Simulation

During the past few years the Goddard Earth Observing System (GEOS) and Massachusetts Institute of Technology (MIT) modeling groups have produced, respectively, global atmosphere-only and ocean-only simulations with km-scale grid spacing. These simulations have proved invaluable for process studies and for the development of satellite and in-situ sampling strategies. Nevertheless, a key limitation of these "nature" simulations is the lack of interaction between the ocean and the atmosphere, which limits their usefulness for studying air-sea interactions and for designing observing missions to study these interactions. We present here results from a coupled GEOS-MIT "nature run" simulation, wherein we have coupled a cubed-sphere-720 (~ 1/8) configuration of the GEOS atmosphere to a lat-lon-cap-1080 (~ 1/12) configuration of the MIT ocean. We compare near-surface diagnostics of this fully coupled ocean-atmosphere simulation to equivalent atmosphere-only and ocean-only simulations. A particular focus of the comparisons is the coupled versus uncoupled differences in interactions between Sea Surface Temperature (SST) and ocean surface wind. We discuss, in particular, a several-day mode of temporal variability in the SST-wind cycle and how it is represented in the different model simulations and in observationally-based products. A mechanism for the cycle, which is driven by SST-wind feedback, is proposed