\u3cem\u3eVaccinium corymbodendron\u3c/em\u3e Dunal as a bridge between taxonomic sections and ploidies in \u3cem\u3eVaccinium\u3c/em\u3e: A work in progress

The species V. corymbodendron of section Pyxothamnus has shown value as a potential bridge between taxonomic sections and ploidies in Vaccinium when involved as either a first generation or second generation parent. Tetraploid V. corymbodendron has hybridized successfully with 2x and 4x section Cyanococcus species and with 2x section Vitis-idaea. Hybridizations with other sections are currently being tested. Second generation allotetraploid V. corymbodendron - V. vitis-idaea hybrids have hybridized successfully with 4x section Oxycoccus (cranberry), 4x section Cyanococcus (blueberry), and 2x section Vitis-idaea (lingonberry). It appears that these allotetraploid hybrids may allow gene movement among these diverse sections at the 4x level. Further test-crosses are being made to evaluate the range of crossability of 4x V. corymbodendron and the V. corymbodendron allotetraploids with other taxonomic sections of Ericaceae

Using next-generation sequencing technology for pathogen discovery

Blueberries are woody perennials that, with proper care, can produce a crop each year for decades. In some fields in New Jersey, fruit yields and plant health are declining without definitive cause. Microbial communities in the soil can directly or indirectly affect plant health. Thus, determining what soil organisms are associated with decline, might provide clues for developing approaches to remediation. Soils were collected from the rhizosphere of blueberry plants in healthy and ‘decline-associated’ fields. DNA was extracted from the soils and target regions (16S for bacteria, ITS for fungi, and 18S for nematodes) were amplified by PCR and sequenced. Taxonomic determinations of the soil microorganisms were based on sequence similarity using BLAST. Preliminary data showed the bacterial community was dominated by the Proteobacteria, with no distinct differences between the soil types. FUNGuild was used to assign the fungal taxa to ecological guild. Most of the fungi detected were saprotrophs, but a substantial number of potential plant pathogens were also identified. We identified more than 70 nematode genera and of those genera detected, only three were classified by NEMAGuild to be plant parasites. Follow up studies are needed to confirm the presence and potential impact of bacterial, fungal, and nematode phyla that may be associated with decline

Phytoplasma Infection Influences Gene Expression in American Cranberry

Cranberry false blossom disease (CFBD) is caused by a leafhopper-vectored phytoplasma infection. CFBD results in distinctive branching of the upright shoots (witches' broom) and the formation of deformed flowers that fail to produce fruit. This disease is reemerging and poses a serious threat to the cranberry industry. To determine the impact of the disease on host gene expression, we compared transcriptome profiles between plants with CFBD and uninfected cranberry plants. We found that phytoplasma infection induced expression of 132 genes, and suppressed 225 genes, compared to uninfected cranberry plants. Differentially expressed genes between uninfected and infected plants were largely associated with primary and secondary metabolic, defensive, and developmental pathways. Phytoplasma infection increased the expression of genes associated with nutrient metabolism, while suppressing genes associated with defensive pathways. This expression profile change supports the “host manipulation hypothesis,” whereby CFBD enhances host quality for insect vectors, thus promoting phytoplasma transmission

RNA-seq combined with a bulked-segregant analysis identifies candidate genes for the waxy coating on blueberry fruit

The most significant difference between blueberries with a light blue fruit color and black fruit color is the visible layer of an epicuticular waxy coating. This layer functions in disease defense and prevention of water loss. In this study, we constructed a northern-adapted rabbiteye hybrid breeding population, ‘Nocturne’ x T 300, which segregated for fruit color (light blue versus black). We screened this population and selected plants of each extreme phenotype, waxy- coated plants with light blue colored fruit versus non-waxy plants with black colored fruit, then isolated RNA from fruit tissue of each bulk, respectively. We sequenced the transcriptome of each bulk using RNA-seq, which resulted in a total of 167,093,354 reads for both libraries combined. We de novo assembled this data set into 171,678 contigs and used the assembled transcriptome as a reference for differential expression analysis using EdgeR. A total of 515 differentially expressed genes were identified with at least a four-fold difference in expression, and efforts were made to functionally annotate them using publicly available databases. From these, one excellent candidate ‘waxy’ gene has emerged, which we are investigating further

Assessment and comparison of rhizosphere communities in cultivated Vaccinium spp. provide a baseline for study of causative agents in decline

It has long been recognized that the community of organisms associated with plant roots is a critical component of the phytobiome and can directly or indirectly contribute to the overall health of the plant. The rhizosphere microbial community is influenced by a number of factors including the soil type, the species of plants growing in those soils, and in the case of cultivated plants, the management practices associated with crop production. Vaccinium species, such as highbush blueberry and American cranberry, are woody perennials that grow in sandy, acidic soils with low to moderate levels of organic matter and a paucity of nutrients. When properly maintained, fields planted with these crops remain productive for many years. In some cases, however, yields and fruit quality decline over time, and it is suspected that degenerating soil health and/or changes in the rhizosphere microbiome are contributing factors. Determining the assemblage of bacterial and fungal microorganisms typically associated with the rhizosphere of these crops is a critical first step toward addressing the complex issue of soil health. We hypothesized that since blueberry and cranberry are in the same genus and grow in similar soils, that their associated rhizosphere microbial communities would be similar to each other. We analyzed the eukaryotic (primarily fungal) and bacterial communities from the rhizosphere of representative blueberry and cranberry plants growing in commercial fields in New Jersey. The data presented herein show that while the bacterial communities between the crops is very similar, the fungal communities associated with each crop are quite different. These results provide a framework for examining microbial components that might contribute to the health of Vaccinium spp. crops in New Jersey and other parts of the northeastern U.S

There and back again: historical perspective and future directions for Vaccinium breeding and research studies

The genus Vaccinium L. (Ericaceae) contains a wide diversity of culturally and economically important berry crop species. Consumer demand and scientific research in blueberry (Vaccinium spp.) and cranberry (Vaccinium macrocarpon) have increased worldwide over the crops' relatively short domestication history (~100 years). Other species, including bilberry (Vaccinium myrtillus), lingonberry (Vaccinium vitis-idaea), and ohelo berry (Vaccinium reticulatum) are largely still harvested from the wild but with crop improvement efforts underway. Here, we present a review article on these Vaccinium berry crops on topics that span taxonomy to genetics and genomics to breeding. We highlight the accomplishments made thus far for each of these crops, along their journey from the wild, and propose research areas and questions that will require investments by the community over the coming decades to guide future crop improvement efforts. New tools and resources are needed to underpin the development of superior cultivars that are not only more resilient to various environmental stresses and higher yielding, but also produce fruit that continue to meet a variety of consumer preferences, including fruit quality and health related trait

Fungal Mitochondrial DNases: Effectors with the Potential to Activate Plant Defenses in Nonhost Resistance

Previous reports on the model nonhost resistance interaction between Fusarium solani f. sp. phaseoli and pea endocarp tissue have described the disease resistance-signaling role of a fungal DNase1-like protein. The response resulted in no further growth beyond spore germination. This F. solani f. sp. phaseoli DNase gene, constructed with a pathogenesis-related (PR) gene promoter, when transferred to tobacco, generated resistance against Pseudomonas syringe pv. tabaci. The current analytical/theoretical article proposes similar roles for the additional nuclear and mitochondrial nucleases, the coding regions for which are identified in newly available fungal genome sequences. The amino acid sequence homologies within functional domains are conserved within a wide array of fungi. The potato pathogen Verticillium dahliae nuclease was divergent from that of the saprophyte, yeast; however, the purified DNase from yeast also elicited nonhost defense responses in pea, including pisatin accumulation, PR gene induction, and resistance against a true pea pathogen. The yeast mitochondrial DNase gene (open reading frame) predictably codes for a signal peptide providing the mechanism for secretion. Mitochondrial DNase genes appear to provide an unlimited source of components for developing transgenic resistance in all transformable plants. </jats:p