Search for Exotic Strange Quark Matter in High Energy Nuclear Reactions

We report on a search for metastable positively and negatively charged states of strange quark matter in Au+Pb reactions at 11.6 A GeV/c in experiment E864. We have sampled approximately six billion 10% most central Au+Pb interactions and have observed no strangelet states (baryon number A < 100 droplets of strange quark matter). We thus set upper limits on the production of these exotic states at the level of 1-6 x 10^{-8} per central collision. These limits are the best and most model independent for this colliding system. We discuss the implications of our results on strangelet production mechanisms, and also on the stability question of strange quark matter.Comment: 21 pages, 9 figures, to be published in Nuclear Physics A (Carl Dover memorial edition

Search for Strange Quark Matter Produced in Relativistic Heavy Ion Collisions

We present the final results from Experiment 864 of a search for charged and neutral strange quark matter produced in interactions of 11.5 GeV/c per nucleon Au beams with Pt or Pb targets. Searches were made for strange quark matter with A>4. Approximately 30 billion 10% most central collisions were sampled and no strangelet states with A<100 were observed. We find 90% confidence level upper limits of approximately 10^{-8} per central collision for both charged and neutral strangelets. These limits are for strangelets with proper lifetimes greater than 50 ns. Also limits for H^{0}-d and pineut production are given. The above limits are compared with the predictions of various models. The yields of light nuclei from coalescence are measured and a penalty factor for the addition of one nucleon to the coalescing nucleus is determined. This is useful in gauging the significance of our upper limits and also in planning future searches for strange quark matter.Comment: 35 pages, 18 figures, submitted to Phys. Rev.

Proteome-Wide Analysis of Single-Nucleotide Variations in the N-Glycosylation Sequon of Human Genes

N-linked glycosylation is one of the most frequent post-translational modifications of proteins with a profound impact on their biological function. Besides other functions, N-linked glycosylation assists in protein folding, determines protein orientation at the cell surface, or protects proteins from proteases. The N-linked glycans attach to asparagines in the sequence context Asn-X-Ser/Thr, where X is any amino acid except proline. Any variation (e.g. non-synonymous single nucleotide polymorphism or mutation) that abolishes the N-glycosylation sequence motif will lead to the loss of a glycosylation site. On the other hand, variations causing a substitution that creates a new N-glycosylation sequence motif can result in the gain of glycosylation. Although the general importance of glycosylation is well known and acknowledged, the effect of variation on the actual glycoproteome of an organism is still mostly unknown. In this study, we focus on a comprehensive analysis of non-synonymous single nucleotide variations (nsSNV) that lead to either loss or gain of the N-glycosylation motif. We find that 1091 proteins have modified N-glycosylation sequons due to nsSNVs in the genome. Based on analysis of proteins that have a solved 3D structure at the site of variation, we find that 48% of the variations that lead to changes in glycosylation sites occur at the loop and bend regions of the proteins. Pathway and function enrichment analysis show that a significant number of proteins that gained or lost the glycosylation motif are involved in kinase activity, immune response, and blood coagulation. A structure-function analysis of a blood coagulation protein, antithrombin III and a protease, cathepsin D, showcases how a comprehensive study followed by structural analysis can help better understand the functional impact of the nsSNVs

CNGS beam monitor with the LVD detector

The importance of an adequate CNGS beam monitor at the Gran Sasso Laboratory has been stressed in many papers. Since the number of internal v(mu) CC and NC interactions in the various detectors will not allow to collect statistics rapidly, one should also be able to detect the v(mu) CC interactions in the upstream rock. In this study, we have investigated the performances of the LVD detector as a monitor for the CNGS neutrino beam. Thanks to its wide area (13 x 11 m(2) orthogonal to the beam direction) LVD can detect about 120 muons per day originated by v(mu) CC interactions in the rock. The LVD total mass is similar to2 kt. This allows to get 30 more CNGS events per day as internal (NC + CC) v(mu) interactions, for a total of similar to150 events/day. A 3% statistical error can be reached in 7 days. Taking into account the time characteristics of the CNGS beam, the cosmic muon background can be reduced to a negligible level, of the order of 1.5 events/day. (C) 2003 Elsevier B.V. All rights reserved.51619610