Archaeological data often cited as evidence of MHP in prehistoric societies.

<p>See <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0134817#pone.0134817.s003" target="_blank">S1 Table</a> for additional details.</p><p>Archaeological data often cited as evidence of MHP in prehistoric societies.</p

Geographic distribution of the sampled societies (using the EA to assess the level of stratification).

<p>Full circles: societies with MHP; empty circles: societies without MHP.</p

AllRData

R data of all the analyzed simulations

README

This package contains the code used to simulate and analyze the data used in the publication

AllForward option file

Example of an option file to give instructions to AllForward.exe. This file should be placed in the same folder as the program AllForward.exe for the options to be read. This file must be named "AllForward.txt", unless another name is specified in the command line when calling the program

Graphes

Knitr (R+Latex) code used to produce the graphes in the publication. (needs AllRData.RData

ExampleAnalysis

Example of the use of mtfunc() on a series of scenarios. Once the analyses are run for all scenarios, the result files (for instance BDbresults.txt, BDbresultsnofix.txt, and BDbDistriMtMax.txt here) can all be loaded to create AllRData.RData

data-manuscript-Jourdan-Pineau-Evolution

This file contains the genotype data as well as the measured size of every sample. It also gives the geographic localization of the studied sites and the sampling dates

SourceCode

Source code for the simulation of multi-locus introgression during secondary contacts. After decompression, add the file present at https://github.com/timotheenivalis/CodeAllForward/blob/master/MersenneTwister.h to the directory. The program can then be compiled, for instance, with g++ -o AllForward -O2 *.cp

Script of program to simulate HFC in family-structured samples

This is the script for our simulations (HFC in family structured samples)