Inferring kangaroo phylogeny from incongruent nuclear and mitochondrial genes

The marsupial genus Macropus includes three subgenera, the familiar large grazing kangaroos and wallaroos of M. (Macropus) and M. (Osphranter), as well as the smaller mixed grazing/browsing wallabies of M. (Notamacropus). A recent study of five concatenated nuclear genes recommended subsuming the predominantly browsing Wallabia bicolor (swamp wallaby) into Macropus. To further examine this proposal we sequenced partial mitochondrial genomes for kangaroos and wallabies. These sequences strongly favour the morphological placement of W. bicolor as sister to Macropus, although place M. irma (black-gloved wallaby) within M. (Osphranter) rather than as expected, with M. (Notamacropus). Species tree estimation from separately analysed mitochondrial and nuclear genes favours retaining Macropus and Wallabia as separate genera. A simulation study finds that incomplete lineage sorting among nuclear genes is a plausible explanation for incongruence with the mitochondrial placement of W. bicolor, while mitochondrial introgression from a wallaroo into M. irma is the deepest such event identified in marsupials. Similar such coalescent simulations for interpreting gene tree conflicts will increase in both relevance and statistical power as species-level phylogenetics enters the genomic age. Ecological considerations in turn, hint at a role for selection in accelerating the fixation of introgressed or incompletely sorted loci. More generally the inclusion of the mitochondrial sequences substantially enhanced phylogenetic resolution. However, we caution that the evolutionary dynamics that enhance mitochondria as speciation indicators in the presence of incomplete lineage sorting may also render them especially susceptible to introgression

Trace-Element Concentrations In Human Hair Measured By Proton-Induced X-Ray Emission

Proton-induced x-ray spectroscopy has been used to measure trace element concentration ratios for 10 elements relative to Zn on a group of the population in the harbor city of Rijeka, Yugoslavia. The average biologic levels of elemental ratios for the inhabitants of this region have been established. The presence of pollutants has been confirmed by studying the variation of elemental concentration ratios along single samples of hair

Absolute Calibration of a 200 MeV Proton Polarimeter for Use with the Brookhaven Linac

This work was supported by the National Science Foundation Grant NSF PHY 81-14339 and by Indiana Universit

Unitarity and the Bethe-Salpeter Equation

We investigate the relation between different three-dimensional reductions of the Bethe-Salpeter equation and the analytic structure of the resultant amplitudes in the energy plane. This correlation is studied for both the $\phi^2\sigma$ interaction Lagrangian and the $\pi N$ system with $s$-, $u$-, and $t$-channel pole diagrams as driving terms. We observe that the equal-time equation, which includes some of the three-body unitarity cuts, gives the best agreement with the Bethe-Salpeter result. This is followed by other 3-D approximations that have less of the analytic structure.Comment: 17 pages, 8 figures; RevTeX. Version accepted for publication in Phys. Rev.

A Bezier curve-based generic shape encoder

Existing Bezier curve based shape description techniques primarily focus upon determining a set of pertinent Control Points (CP) to represent a particular shape contour. While many different approaches have been proposed, none adequately consider domain specific information about the shape contour like its gradualness and sharpness, in the CP generation process which can potentially result in large distortions in the object’s shape representation. This paper introduces a novel Bezier Curve-based Generic Shape Encoder (BCGSE) that partitions an object contour into contiguous segments based upon its cornerity, before generating the CP for each segment using relevant shape curvature information. In addition, while CP encoding has generally been ignored, BCGSE embeds an efficient vertex-based encoding strategy exploiting the latent equidistance between consecutive CP. A nonlinear optimisation technique is also presented to enable the encoder is automatically adapt to bit-rate constraints. The performance of the BCGSE framework has been rigorously tested on a variety of diverse arbitrary shapes from both a distortion and requisite bit-rate perspective, with qualitative and quantitative results corroborating its superiority over existing shape descriptors

Is weak temperature dependence of electron dephasing possible?

The first-principle theory of electron dephasing by disorder-induced two state fluctuators is developed. There exist two mechanisms of dephasing. First, dephasing occurs due to direct transitions between the defect levels caused by inelastic electron-defect scattering. The second mechanism is due to violation of the time reversal symmetry caused by time-dependent fluctuations of the scattering potential. These fluctuations originate from an interaction between the dynamic defects and conduction electrons forming a thermal bath. The first contribution to the dephasing rate saturates as temperature decreases. The second contribution does not saturate, although its temperature dependence is rather weak, $\propto T^{1/3}$. The quantitative estimates based on the experimental data show that these mechanisms considered can explain the weak temperature dependence of the dephasing rate in some temperature interval. However, below some temperature dependent on the model of dynamic defects the dephasing rate tends rapidly to zero. The relation to earlier studies of the dephasing caused by the dynamical defects is discussed.Comment: 14 pages, 6 figures, submitted to PR

Inhibiting decoherence via ancilla processes

General conditions are derived for preventing the decoherence of a single two-state quantum system (qubit) in a thermal bath. The employed auxiliary systems required for this purpose are merely assumed to be weak for the general condition while various examples such as extra qubits and extra classical fields are studied for applications in quantum information processing. The general condition is confirmed with well known approaches towards inhibiting decoherence. A novel approach for decoherence-free quantum memories and quantum operations is presented by placing the qubit into the center of a sphere with extra qubits on its surface.Comment: pages 8, Revtex

Long range facial image acquisition and quality

Abstract This chapter introduces issues in long range facial image acquisition and measures for image quality and their usage. Section 1, on image acquisition for face recognition discusses issues in lighting, sensor, lens, blur issues, which impact short-range biometrics, but are more pronounced in long-range biometrics. Section 2 introduces the design of controlled experiments for long range face, and why they are needed. Section 3 introduces some of the weather and atmospheric effects that occur for long-range imaging, with numerous of examples. Section 4 addresses measurements of “system quality”, including image-quality measures and their use in prediction of face recognition algorithm. That section introduces the concept of failure prediction and techniques for analyzing different “quality ” measures. The section ends with a discussion of post-recognition ”failure prediction ” and its potential role as a feedback mechanism in acquisition. Each section includes a collection of open-ended questions to challenge the reader to think about the concepts more deeply. For some of the questions we answer them after they are introduced; others are left as an exercise for the reader. 1 Image Acquisition Before any recognition can even be attempted, they system must acquire an image of the subject with sufficient quality and resolution to detect and recognize the face. The issues examined in this section are the sensor-issues in lighting, image/sensor resolution issues, the field-of view, the depth of field, and effects of motion blur

The Planetary Nebula Luminosity Function at the Dawn of Gaia

The [O III] 5007 Planetary Nebula Luminosity Function (PNLF) is an excellent extragalactic standard candle. In theory, the PNLF method should not work at all, since the luminosities of the brightest planetary nebulae (PNe) should be highly sensitive to the age of their host stellar population. Yet the method appears robust, as it consistently produces < 10% distances to galaxies of all Hubble types, from the earliest ellipticals to the latest-type spirals and irregulars. It is therefore uniquely suited for cross-checking the results of other techniques and finding small offsets between the Population I and Population II distance ladders. We review the calibration of the method and show that the zero points provided by Cepheids and the Tip of the Red Giant Branch are in excellent agreement. We then compare the results of the PNLF with those from Surface Brightness Fluctuation measurements, and show that, although both techniques agree in a relative sense, the latter method yields distances that are ~15% larger than those from the PNLF. We trace this discrepancy back to the calibration galaxies and argue that, due to a small systematic error associated with internal reddening, the true distance scale likely falls between the extremes of the two methods. We also demonstrate how PNLF measurements in the early-type galaxies that have hosted Type Ia supernovae can help calibrate the SN Ia maximum magnitude-rate of decline relation. Finally, we discuss how the results from space missions such as Kepler and Gaia can help our understanding of the PNLF phenomenon and improve our knowledge of the physics of local planetary nebulae.Comment: 12 pages, invited review at the conference "The Fundamental Cosmic Distance Scale: State of the Art and Gaia Perspective", to appear in Astrophysics and Space Scienc

The ^4He trimer as an Efimov system

We review the results obtained in the last four decades which demonstrate the Efimov nature of the $^4$He three-atomic system.Comment: Review article for a special issue of the Few-Body Systems journal devoted to Efimov physic