AbyssAssemblies

Contains the ABySS assembly output for each library. Each file has the following naming convention: LIBRARY_KMER_KMERCOV-contigs.f

Draco_Alignments

Contains alignments for the Draco samples

Passerines_CleanReads

Contains the cleaned reads for the Passerine samples

Enyalius_CleanReads

Contains cleaned reads for the Enyalius samples

Passerines_Alignments

Contains alignments for the Passerine samples

Draco_CleanReads

Contains the cleaned reads for the Draco samples

References

Contains the references recovered for each locus for each sample

Enyalius_Alignments

Contains the alignments for the Enyalius samples

Haplotypes

Contains haplotypes for the heterozygous loci for all the samples. The homozygous loci and the haploid mitochondrial genes can be recovered from the references