On the trails of Josias Braun-Blanquet : changes in the grasslands of the inneralpine dry valleys during the last 70 years. First results from the 11th EDGG Field Workshop in Austria

The 11th EDGG Field Workshop was held from 6 to 13 July 2018 in Austria. Its aim was to revisit dry grasslands in the inneralpine dry valleys of Austria that were investigated in the late 1950s by Braun-Blanquet and to collect high-quality biodiversity data from these. Sampling was carried out in the Styrian Mur Valley, the Virgen Valley in East Tyrol, the Upper Inn Valley in the Austrian Eastern Alps, and Griffen in Carinthia. In total, we sampled 15 EDGG biodiversity plots and 37 additional 10 m2 plots. Butterfly data were record-ed in four biodiversity plots and two additional plots. We found maximum richness values of 49, 68 and 95 vascular plant species on 1, 10 and 100 m², while the corresponding values for the complete terrestrial vegetation were 56, 73 and 106 species. Maximum butterfly richness was 19, but it was in general quite low, and generalists dominated. Some of the areas originally studied by Braun-Blanquet were no longer dry grasslands and only a few sites remained largely unchanged. Detrended Correspondence Analysis (DCA) showed profound changes between the old (1950s and 1980s) and our current plots. Without grazing or other human land management activities, only very small cores of rocky dry grassland could survive in the comparatively humid Austrian inneralpine valleys. Finally, the sampled data raise questions about the syntaxonomic position of some of the grasslands, which needs to be addressed in a more comprehensive study, which is planned as the next step

Proposal of a standardized EDGG surveying methodology for orthopteroid insects

Orthopteroid insects (Caelifera, Ensifera, Mantodea) are characteristic of grassland ecosystems. They are often key species in grassland food webs, and many species have very specific requirements concerning habitat structure. Thus, orthopteroid insects are valued and widely used indicators in grassland ecology. Here we propose a standardised surveying methodology for orthopteroid insects in EDGG Biodiversity Plots. A variety of methods to survey orthopteroid insects have been used in the past, most of them based on sweep netting along a defined transect. The method proposed here is also based on this principle, but additionally utilises an exhaustive search to capture total species richness and estimate the frequency of the surveyed species. The method can be used in any grassland survey that is based on EDGG Biodiversity Plot and similar sampling designs. It was tested during the EDGG Field Workshop 2019 in Armenia, and has proven its applicability in a wide range of different grassland types

Phylogenomic inference and demographic model selection suggest peripatric separation of the cryptic steppe ant species Plagiolepis pyrenaica stat. rev.

The ant Plagiolepis taurica Santschi, 1920 (Hymenoptera, Formicidae) is a typical species of the Eurasian steppes, a large grassland dominated biome that stretches continuously from Central Asia to Eastern Europe and is represented by disjunct outposts also in Central and Western Europe. The extent of this biome has been influenced by the Pleistocene climate, and steppes expanded recurrently during cold stages and contracted in warm stages. Consequently, stenotopic steppe species such as P. taurica repeatedly went through periods of demographic expansion and severe isolation. Here, we explore the impact of these dynamics on the genetic diversification within P. taurica. Delimitation of P. taurica from other Plagiolepis species has been unclear since its initial description, which raised questions on both its classification and its spatiotemporal diversification early on. We re-evaluate species limits and explore underlying mechanisms driving speciation by using an integrative approach based on genomic and morphometric data. We found large intraspecific divergence within P. taurica and resolved geographically coherent western and eastern genetic groups, which likewise differed morphologically. A morphometric survey of type material showed that Plagiolepis from the western group were more similar to P. barbara pyrenaica Emery, 1921 than to P. taurica; we thus lift the former from synonymy and establish it as separate species, P. pyrenaica stat. rev. Explicit evolutionary model testing based on genomic data supported a peripatric speciation for the species pair, probably as a consequence of steppe contraction and isolation during the mid-Pleistocene. We speculate that this scenario could be exemplary for many stenotopic steppe species, given the emphasized dynamics of Eurasian steppes

Use of Long-Acting Injectable Antipsychotics in Inpatients with Schizophrenia Spectrum Disorder in an Academic Psychiatric Hospital in Switzerland

Long-acting injectable antipsychotics (LAIs) offer many benefits to patients with schizophrenia spectrum disorder (SSD). They are used with very different frequencies due to questions of eligibility or patients and prescribers’ attitudes towards LAI use. We assessed the prescribing rates of LAIs in a large academic psychiatric hospital with a public service mandate in Switzerland and compared them with other countries and health care systems. To our knowledge, this study is the first to investigate inpatient LAI use in Europe. Medical records of all patients diagnosed with SSD discharged from the Clinic of Adult Psychiatry of the University Hospital of Psychiatry Zurich over a 12 month period from January to December 2019 were evaluated regarding the prescribed antipsychotics at the time of discharge. The rates of use of LAIs among all patients and among patients receiving LAI-eligible antipsychotic substances were assessed retrospectively. We assessed records of 885 patients with SSD. Among all cases, 13.9% received an LAI. Among patients who received antipsychotic medication that was eligible for LAI use (n = 434), 28.1% received an agent as an LAI. LAI use included paliperidone palmitate (69.9%), aripiprazole monohydrate (14.6%), risperidone (4.9%) and first-generation LAIs (9.8%). Compared to international frequencies of LAI administration, the prescription rate of LAIs in SSD patients was low. Further studies will evaluate patient- and prescriber-related reasons for this low rate

Performance comparison of two reduced-representation based genome-wide marker-discovery strategies in a multi-taxon phylogeographic framework

Multi-locus genetic data are pivotal in phylogenetics. Today, high-throughput sequencing (HTS) allows scientists to generate an unprecedented amount of such data from any organism. However, HTS is resource intense and may not be accessible to wide parts of the scientific community. In phylogeography, the use of HTS has concentrated on a few taxonomic groups, and the amount of data used to resolve a phylogeographic pattern often seems arbitrary. We explore the performance of two genetic marker sampling strategies and the effect of marker quantity in a comparative phylogeographic framework focusing on six species (arthropods and plants). The same analyses were applied to data inferred from amplified fragment length polymorphism fingerprinting (AFLP), a cheap, non-HTS based technique that is able to straightforwardly produce several hundred markers, and from restriction site associated DNA sequencing (RADseq), a more expensive, HTS-based technique that produces thousands of single nucleotide polymorphisms. We show that in four of six study species, AFLP leads to results comparable with those of RADseq. While we do not aim to contest the advantages of HTS techniques, we also show that AFLP is a robust technique to delimit evolutionary entities in both plants and animals. The demonstrated similarity of results from the two techniques also strengthens biological conclusions that were based on AFLP data in the past, an important finding given the wide utilization of AFLP over the last decades. We emphasize that whenever the delimitation of evolutionary entities is the central goal, as it is in many fields of biodiversity research, AFLP is still an adequate technique.Te present study was co-funded by the Austrian Science Fund (FWF, project P25955 “Origin of steppe fora and fauna in inner-Alpine dry valleys” to P.S.), and the Tiroler Wissenschafsfonds (TWF, UNI-0404/2066,“Comparing information efciency of high- versus low-resolution genome scans for phylogeographic studies” to P.K.). Te computational results presented have been achieved using the HPC infrastructure LEO of the University of Innsbruck

Targeting oncogenic KRasG13C with nucleotide-based covalent inhibitors

Mutations within Ras proteins represent major drivers in human cancer. In this study, we report the structure-based design, synthesis, as well as biochemical and cellular evaluation of nucleotide-based covalent inhibitors for KRasG13C, an important oncogenic mutant of Ras that has not been successfully addressed in the past. Mass spectrometry experiments and kinetic studies reveal promising molecular properties of these covalent inhibitors, and X-ray crystallographic analysis has yielded the first reported crystal structures of KRasG13C covalently locked with these GDP analogues. Importantly, KRasG13C covalently modified with these inhibitors can no longer undergo SOS-catalysed nucleotide exchange. As a final proof-of-concept, we show that in contrast to KRasG13C, the covalently locked protein is unable to induce oncogenic signalling in cells, further highlighting the possibility of using nucleotide-based inhibitors with covalent warheads in KRasG13C-driven cancer

An evolutionary and structural characterization of mammalian protein complex organization

Background: We have recently released a comprehensive, manually curated database of mammalian protein complexes called CORUM. Combining CORUM with other resources, we assembled a dataset of over 2700 mammalian complexes. The availability of a rich information resource allows us to search for organizational properties concerning these complexes. Results: As the complexity of a protein complex in terms of the number of unique subunits increases, we observed that the number of such complexes and the mean non-synonymous to synonymous substitution ratio of associated genes tend to decrease. Similarly, as the number of different complexes a given protein participates in increases, the number of such proteins and the substitution ratio of the associated gene also tend to decrease. These observations provide evidence relating natural selection and the organization of mammalian complexes. We also observed greater homogeneity in terms of predicted protein isoelectric points, secondary structure and substitution ratio in annotated versus randomly generated complexes. A large proportion of the protein content and interactions in the complexes could be predicted from known binary protein-protein and domain-domain interactions. In particular, we found that large proteins interact preferentially with much smaller proteins. Conclusions: We observed similar trends in yeast and other data. Our results support the existence of conserved relations associated with the mammalian protein complexes

Automated online monitoring of fecal pollution in water by enzymatic methods

RÉSUMÉ: To facilitate the prompt management of public health risks from water resources, the fluorescence-based detection of the enzymatic activity of β-d-glucuronidase (GLUC) has been suggested as a rapid method to monitor fecal pollution. New technological adaptations enable now its automated, near-real-time measurement in a robust and analytically precise manner. Large data sets of high temporal or spatial resolution have been reported from a variety of freshwater resources, demonstrating the great potential of this automated method. However, the fecal indication capacity of GLUC activity and the potential link to health risk is still unclear, presenting considerable limitations. This review provides a critical evaluation of automated, online GLUC-based methods (and alternatives) and defines open questions to be solved before the method can fully support water management