A model of an optical biosensor detecting environment

Heller et. Al. (Science 311, 508 (2006)) demonstrated the first DNA-CN optical sensor by wrapping a piece of double-stranded DNA around the surface of single-walled carbon nanotubes (CN). This new type of optical device can be placed inside living cells and detect trace amounts of harmful contaminants by means of near infrared light. Using a simple exciton theory in nanostructures and the phenomena of B-Z structural phase transition of DNA, we investigate the working principle of this new class of optical biosensor from DNA by using the nanostructure surface as a sensor to detect the property change of DNA as it responds to the presence of target ions. We also propose some new design models by replacing carbon nanotubes with graphene ribbon semiconductors.Comment: 4 pages, 4 figures, Accepte

A new type of optical biosensor from DNA wrapped semiconductor graphene ribbons

Based on a model of the optical biosensors (Science 311, 508 (2006)) by wrapping a piece of double-stranded DNA around the surface of single-walled carbon nanotubes (SWCNT), we propose a new design model of this sensor, in which the SWCNT is replaced by a semiconductor graphene ribbon (SGR). Using a simple theory of exciton in SGRs, we investigated transition of DNA secondary structure from the native, right-handed B form to the alternate, left-handed Z form. This structural phase transition of DNA is the working principle of this optical biosensor at the sub cellular level from DNA and semiconductor graphene ribbons.Comment: 5 pages, 4 figures; Published on JAP (2012

Repulsive and attractive Casimir interactions in liquids

The Casimir interactions in the solid-liquid-solid systems as a function of separation distance have been studied by the Lifshitz theory. The dielectric permittivity functions for a wide range of materials are described by Drude, Drude-Lorentz and oscillator models. We find that the Casimir forces between gold and silica or MgO materials are both the repulsive and attractive. We also find the stable forms for the systems. Our studies would provide a good guidance for the future experimental studies on the dispersion interactions.Comment: 6 pages, 5 figures, submitted to Phys. Rev. A (2011). arXiv admin note: minor text overlap with arXiv:1002.260

Microwave Assisted Co/SiO2 preparation for Fischer-Tropsch synthesis

Cobalt catalyst has been widely used for Fischer-Tropsch (FT) Synthesis in Industry. The most common method to prepare cobalt catalyst is impregnations. Metal is deposited on porous support by contacting dry support with solution containing dissolved cobalt precursor. This step will follow by drying, calcination and reduction. The heating step used in this conventional method, however, may lead to the formation of metal silicate which is inactive site for catalysis.  In this study, author explore the use of microwave to prepare catalyst compared to conventional drying method. Cobalt catalyst with SiO2 support was prepared and characterized. Particle size, surface area, and cobalt content were investigated. Crystallite size of 3-8 nm was formed which was reported to be the optimum size for cobalt catalyst in FT Synthesis. Scanning Electron Microscope (SEM) and Transmission Electron Microscopy (TEM) image revealed that microwave catalyst showed better uniformity and cobalt dispersion on silica support. Thermo-Gravimetric Analysis (TGA) study also indicated that this catalyst has good stability at Low Temperature Fischer-Tropsch Synthesis. The catalysts were then applied plasma assisted FT process over a range of power plasma (20-60W) to investigate the effect on the conversion and selectivity. The results showed that microwave catalyst exhibit lower CO conversion at 42.06% compared to conventional method at 68.32%. However, microwave catalyst is more favourable for long chain hydrocarbon selectivity

Temperature dependent graphene suspension due to thermal Casimir interaction

Thermal effects contributing to the Casimir interaction between objects are usually small at room temperature and they are difficult to separate from quantum mechanical contributions at higher temperatures. We propose that the thermal Casimir force effect can be observed for a graphene flake suspended in a fluid between substrates at the room temperature regime. The properly chosen materials for the substrates and fluid induce a Casimir repulsion. The balance with the other forces, such as gravity and buoyancy, results in a stable temperature dependent equilibrium separation. The suspended graphene is a promising system due to its potential for observing thermal Casimir effects at room temperature.Comment: 5 pages, 4 figures, in APL production 201

Major G-Quadruplex Form of HIV-1 LTR Reveals a (3 + 1) Folding Topology Containing a Stem-Loop

Nucleic acids can form noncanonical four-stranded structures called G-quadruplexes. G-quadruplex-forming sequences are found in several genomes including human and viruses. Previous studies showed that the G-rich sequence located in the U3 promoter region of the HIV-1 long terminal repeat (LTR) folds into a set of dynamically interchangeable G-quadruplex structures. G-quadruplexes formed in the LTR could act as silencer elements to regulate viral transcription. Stabilization of LTR G-quadruplexes by G-quadruplex-specific ligands resulted in decreased viral production, suggesting the possibility of targeting viral G-quadruplex structures for antiviral purposes. Among all the G-quadruplexes formed in the LTR sequence, LTR-III was shown to be the major G-quadruplex conformation in vitro. Here we report the NMR structure of LTR-III in K+ solution, revealing the formation of a unique quadruplex-duplex hybrid consisting of a three-layer (3 + 1) G-quadruplex scaffold, a 12-nt diagonal loop containing a conserved duplex-stem, a 3-nt lateral loop, a 1-nt propeller loop, and a V-shaped loop. Our structure showed several distinct features including a quadruplex-duplex junction, representing an attractive motif for drug targeting. The structure solved in this study may be used as a promising target to selectively impair the viral cycle

Catalytic pyrolysis of plastic waste using metal-incorporated activated carbons for monomer recovery and carbon nanotube synthesis

As the global plastic waste crisis intensifies, innovative and sustainable solutions are urgently needed. This study evaluated waste-derived metal-incorporated activated carbon (AC) catalysts for the pyrolysis of mixed plastic waste to generate value-added products, focusing on product yield distribution, composition, hydrogen, and carbon nanotube (CNT) formation. Pyrolysis-catalysis experiments were conducted using a two-stage fixed-bed reactor, wherein the temperature was maintained at 500 °C in first stage (pyrolysis) and varied (500, 600, and 700 °C) in the second stage (catalysis). The tested ACs were incorporated with nickel (Ni-AC), iron (Fe-AC), and zinc (Zn-AC) to assess the impact of metal particles distributed on the carbonaceous support in the second stage. The results from the ACs were compared to those obtained using zeolite (H-ZSM-5), Raw-AC, and non-catalytic runs. The Ni-AC and Fe-AC demonstrated superior catalytic activity, with Ni-AC being more efficient in producing hydrogen (4.24wt%) and CNTs (34.5wt%) with diameters of approximately 30nm, and Fe-AC leading to higher gas yields (68.8wt%) and CNTs (12.4wt%) of around 60nm. In contrast, Zn-AC and Raw-AC presented limited effectiveness, although Raw-AC moderately outperformed Zn-AC with enhanced gas yields and reduced oil/wax yields. The zeolite H-ZSM-5 exhibited the highest gas yields (78wt%), converting heavy fractions into lighter molecules, notably the monomers ethylene and propylene. These findings provide valuable insights into catalyst selection and optimization for plastic waste pyrolysis processes, with H-ZSM-5 being the most effective catalyst for monomer recovery, and Ni-AC and Fe-AC demonstrating promising results

Biological activities of in vitro liverwort Marchantia polymorpha L. extracts

To overcome the problems in liverwort collecting such as small size and easily mixed with other species in the wild, we have successfully cultivated Marchantia polymorpha L. under in vitro conditions in the previous study. The aim of this study is to evaluate the biological activities of this in vitro biomass as a confirmation of the sufficient protocol in cultivation this species. Cultured biomass was dried at a temperature of 45-50 oC to constant weight and ground into a fine powder. The coarse powder was extracted with organic solvents of increasing polarization including n-hexane, chloroform, ethyl acetate, and ethanol using the maceration technique. Four extracts were investigated antioxidant (iron reduction power, DPPH), antibacterial (agar diffusion), tyrosinase inhibitory activity, anti-proliferation on MCF-7 cells. Additionally, the presence of natural metabolite groups of the extracts was detected by using specific reagents. For antioxidant activity, ethyl acetate fraction extract had the highest iron reducing power and DPPH free radical scavenging ability with IC50 = 439.31 µg ml-1. All three n-hexane, chloroform, and ethyl acetate extracts possessed resistance to the bacterial strain tested. At a concentration of 2 mg ml-1, n-hexane and chloroform extracts had the highest percentage of tyrosinase inhibition (69.54 and 69.10%, respectively). The n-hexane extract is a potent extract that inhibits the proliferation of MCF-7 cells with the lowest IC50 of 38.15 µg ml-1. A preliminary chemical composition survey showed that the cultured biomass liverwort contains many bioactive compounds, particularly the compounds of range of non- and less-polarized fractions

Spectroelectrochemical study of carbon structural and functionality characteristics on vanadium redox reactions for flow batteries

HHP thanks the Santander Mobility Award for funding the visit to Nanyang Technological University (NTU) and Energy Research Institute (ERI@N), Singapore, in 2017/2018, and Prof Ulrich Stimming and his research group for access to the electrochemical facilities. The authors would also like to thank Professor Andrew Hamnett for many helpful discussions regarding the modeling of Electrical Impedance spectra.Peer reviewe