Estimation of respiratory rate from motion contaminated photoplethysmography signals incorporating accelerometry.

Estimation of respiratory rate (RR) from photoplethysmography (PPG) signals has important applications in the healthcare sector, from assisting doctors onwards to monitoring patients in their own homes. The problem is still very challenging, particularly during the motion for large segments of data, where results from different methods often do not agree. The authors aim to propose a new technique which performs motion reduction from PPG signals with the help of simultaneous acceleration signals where the PPG and accelerometer sensors need to be embedded in the same sensor unit. This method also reconstructs motion corrupted PPG signals in the Hilbert domain. An auto-regressive (AR) based technique has been used to estimate the RR from reconstructed PPGs. The proposed method has provided promising results for the estimation of RRs and their variations from PPG signals corrupted with motion artefact. The proposed platform is able to contribute to continuous in-hospital and home-based monitoring of patients using PPG signals under various conditions such as rest and motion states

A Modified Synthetic Aperture Focussing Technique Utilising the Spatial Impulse Response of the Ultrasound Transducer

In B-mode imaging, lateral resolution is impeded by the size and shape of the ultrasound beam used to create the image. For improved lateral resolution, a focussing method that utilises a beam model calculated using the Fraunhofer far field approximations to enhance the Synthetic Aperture Focussing Technique (SAFT) is proposed. The Beam Model Weighted Synthetic Aperture Focussing Technique (BMW-SAFT) method uses an approximation of the beam model to weight the focussing algorithm and adjust the aperture size based on distance from the transducer. Through application to simulated data the method is compared with the conventional SAFT, where the proposed algorithm is found to provide significant improvements over the conventional SAFT methods

pyPPG: A Python toolbox for comprehensive photoplethysmography signal analysis

Photoplethysmography is a non-invasive optical technique that measures changes in blood volume within tissues. It is commonly and increasingly used for in a variety of research and clinical application to assess vascular dynamics and physiological parameters. Yet, contrary to heart rate variability measures, a field which has seen the development of stable standards and advanced toolboxes and software, no such standards and open tools exist for continuous photoplethysmogram (PPG) analysis. Consequently, the primary objective of this research was to identify, standardize, implement and validate key digital PPG biomarkers. This work describes the creation of a standard Python toolbox, denoted pyPPG, for long-term continuous PPG time series analysis recorded using a standard finger-based transmission pulse oximeter. The improved PPG peak detector had an F1-score of 88.19% for the state-of-the-art benchmark when evaluated on 2,054 adult polysomnography recordings totaling over 91 million reference beats. This algorithm outperformed the open-source original Matlab implementation by ~5% when benchmarked on a subset of 100 randomly selected MESA recordings. More than 3,000 fiducial points were manually annotated by two annotators in order to validate the fiducial points detector. The detector consistently demonstrated high performance, with a mean absolute error of less than 10 ms for all fiducial points. Based on these fiducial points, pyPPG engineers a set of 74 PPG biomarkers. Studying the PPG time series variability using pyPPG can enhance our understanding of the manifestations and etiology of diseases. This toolbox can also be used for biomarker engineering in training data-driven models. pyPPG is available on physiozoo.orgComment: The manuscript was submitted to "Physiological Measurement" on September 5, 202

Robust peak detection for photoplethysmography signal analysis

Efficient and accurate evaluation of long-term photoplethysmography (PPG) recordings is essential for both clinical assessments and consumer products. In 2021, the top opensource peak detectors were benchmarked on the Multi-Ethnic Study of Atherosclerosis (MESA) database consisting of polysomnography (PSG) recordings and continuous sleep PPG data, where the Automatic Beat Detector (Aboy) had the best accuracy. This work presents Aboy++, an improved version of the original Aboy beat detector. The algorithm was evaluated on 100 adult PPG recordings from the MESA database, which contains more than 4.25 million reference beats. Aboy++ achieved an F1-score of 85.5%, compared to 80.99% for the original Aboy peak detector. On average, Aboy++ processed a 1 hour-long recording in less than 2 seconds. This is compared to 115 seconds (i.e., over 57-times longer) for the open-source implementation of the original Aboy peak detector. This study demonstrated the importance of developing robust algorithms like Aboy++ to improve PPG data analysis and clinical outcomes. Overall, Aboy++ is a reliable tool for evaluating long-term wearable PPG measurements in clinical and consumer contexts.Comment: 4 pages, 1 figure, 50th Computing in Cardiology conference in Atlanta, Georgia, USA on 1st - 4th October 202

Extraction of respiratory signals from the electrocardiogram and photoplethysmogram: technical and physiological determinants.

OBJECTIVE: Breathing rate (BR) can be estimated by extracting respiratory signals from the electrocardiogram (ECG) or photoplethysmogram (PPG). The extracted respiratory signals may be influenced by several technical and physiological factors. In this study, our aim was to determine how technical and physiological factors influence the quality of respiratory signals. APPROACH: Using a variety of techniques 15 respiratory signals were extracted from the ECG, and 11 from PPG signals collected from 57 healthy subjects. The quality of each respiratory signal was assessed by calculating its correlation with a reference oral-nasal pressure respiratory signal using Pearson's correlation coefficient. MAIN RESULTS: Relevant results informing device design and clinical application were obtained. The results informing device design were: (i) seven out of 11 respiratory signals were of higher quality when extracted from finger PPG compared to ear PPG; (ii) laboratory equipment did not provide higher quality of respiratory signals than a clinical monitor; (iii) the ECG provided higher quality respiratory signals than the PPG; (iv) during downsampling of the ECG and PPG significant reductions in quality were first observed at sampling frequencies of  <250 Hz and  <16 Hz respectively. The results informing clinical application were: (i) frequency modulation-based respiratory signals were generally of lower quality in elderly subjects compared to young subjects; (ii) the qualities of 23 out of 26 respiratory signals were reduced at elevated BRs; (iii) there were no differences associated with gender. SIGNIFICANCE: Recommendations based on the results are provided regarding device designs for BR estimation, and clinical applications. The dataset and code used in this study are publicly available

An impedance pneumography signal quality index: Design, assessment and application to respiratory rate monitoring.

Impedance pneumography (ImP) is widely used for respiratory rate (RR) monitoring. However, ImP-derived RRs can be imprecise. The aim of this study was to develop a signal quality index (SQI) for the ImP signal, and couple it with a RR algorithm, to improve RR monitoring. An SQI was designed which identifies candidate breaths and assesses signal quality using: the variation in detected breath durations, how well peaks and troughs are defined, and the similarity of breath morphologies. The SQI categorises 32 s signal segments as either high or low quality. Its performance was evaluated using two critical care datasets. RRs were estimated from high-quality segments using a RR algorithm, and compared with reference RRs derived from manual annotations. The SQI had a sensitivity of 77.7 %, and specificity of 82.3 %. RRs estimated from segments classified as high quality were accurate and precise, with mean absolute errors of 0.21 and 0.40 breaths per minute (bpm) on the two datasets. Clinical monitor RRs were significantly less precise. The SQI classified 34.9 % of real-world data as high quality. In conclusion, the proposed SQI accurately identifies high-quality segments, and RRs estimated from those segments are precise enough for clinical decision making. This SQI may improve RR monitoring in critical care. Further work should assess it with wearable sensor data.This work was supported by a UK Engineering and Physical Sciences Research Council (EPSRC) Impact Acceleration Award awarded to PHC; the EPSRC [EP/H019944/1]; the Wellcome EPSRC Centre for Medical Engineering at King’s College London [WT 203148/Z/16/Z]; the Oxford and King’s College London Centres of Excellence in Medical Engineering funded by the Wellcome Trust and EPSRC under grants [WT88877/Z/09/Z] and [WT088641/Z/09/Z]; the National Institute for Health Research (NIHR) Biomedical Research Centre based at Guy’s & St Thomas’ NHS Foundation Trust and King’s College London; the NIHR Oxford Biomedical Research Centre Programme; a Royal Academy of Engineering Research Fellowship (RAEng) awarded to DAC; and EPSRC grants EP/P009824/1 and EP/N020774/1 to DAC

Raised Intracellular Calcium Contributes to Ischemia-Induced Depression of Evoked Synaptic Transmission

Oxygen-glucose deprivation (OGD) leads to depression of evoked synaptic transmission, for which the mechanisms remain unclear. We hypothesized that increased presynaptic [Ca2+]i during transient OGD contributes to the depression of evoked field excitatory postsynaptic potentials (fEPSPs). Additionally, we hypothesized that increased buffering of intracellular calcium would shorten electrophysiological recovery after transient ischemia. Mouse hippocampal slices were exposed to 2 to 8 min of OGD. fEPSPs evoked by Schaffer collateral stimulation were recorded in the stratum radiatum, and whole cell current or voltage clamp recordings were performed in CA1 neurons. Transient ischemia led to increased presynaptic [Ca2+]i, (shown by calcium imaging), increased spontaneous miniature EPSP/Cs, and depressed evoked fEPSPs, partially mediated by adenosine. Buffering of intracellular Ca2+ during OGD by membrane-permeant chelators (BAPTA-AM or EGTA-AM) partially prevented fEPSP depression and promoted faster electrophysiological recovery when the OGD challenge was stopped. The blocker of BK channels, charybdotoxin (ChTX), also prevented fEPSP depression, but did not accelerate post-ischemic recovery. These results suggest that OGD leads to elevated presynaptic [Ca2+]i, which reduces evoked transmitter release; this effect can be reversed by increased intracellular Ca2+ buffering which also speeds recovery

Predicting Clinical Deteriorations using Wearable Sensors

Introduction Acutely-ill hospitalised patients are at risk of clinical deteriorations such as cardiac arrest, admission to intensive care, or unexpected death. Currently, patients are manually assessed every 4-6 hours to determine the likelihood of subsequent deterioration. However, this is limited to intermittent assessments, delaying time-sensitive interventions. Wearable sensors, combined with an alerting system, could provide continuous automated assessments of the likelihood of deteriorations. To be suitable for hospital use, wearable sensors must be unobtrusive and provide reliable measurements of key vital signs including breathing rate (BR), a key predictor of deteriorations. The aims of this work were: (i) to develop a technique for monitoring BR unobtrusively using wearable sensors, and (ii) to assess whether wearable sensors provide reliable predictions of deteriorations when using this technique. Monitoring breathing rate (BR) unobtrusively Current methods for monitoring BR using wearable sensors are obtrusive. An alternative approach is to estimate BR from electrocardiogram or pulse oximeter signals, which are already acquired by wearable sensors to monitor heart rate and blood oxygen levels. Both signals are subtly modulated by breathing, providing opportunity to use them to monitor BR. I assessed the performance of previously proposed signal processing techniques for estimating BR from these signals in both healthy and hospitalised subjects. Although some techniques were precise enough for use with healthy subjects in the laboratory, they were imprecise when used with hospital patients. Therefore, I developed a novel technique, combining the strengths of time- and frequency-domain techniques. Its performance was assessed on data from 264 subjects. In hospital patients, the technique provided highly precise BRs 86% of the time, which exceeds the performance of manual observation, the current clinical standard. Assessing the reliability of wearable sensors for predicting deteriorations I implemented methods for rejecting unreliable sensor data, and for fusing continuous multiparametric data, to predict deteriorations. These were used alongside the novel technique for monitoring BR to predict deteriorations using wearable sensors. The system was assessed in a clinical trial of 184 hospital patients, conducted in collaboration with clinicians. The reliability of the system was assessed by comparing its predictions against documented deteriorations. Its predictive value was similar to that of the routine manual assessments (AUROCs of 0.78 vs 0.79). Crucially it provided continuous assessment, potentially providing predictions of deteriorations hours earlier than routine practice. Conclusion This work has demonstrated the potential for wearable sensors to reliably and unobtrusively predict deteriorations, when coupled with a novel technique for monitoring BR. This could improve patient outcomes, and reduce costs. Further work should investigate which patients would benefit most from this technology, and whether it could reduce clinical workload. In the future the technology could potentially be used with consumer wearables to improve patient safety in the community, where clinical expertise is less readily available.This poster was displayed at the STEM for Britain event, held in the Houses of Parliament (London, UK) on 12th March 2018

Respiratory rate monitoring to detect deteriorations using wearable sensors

This poster provides an overview of the work described in: P. H. Charlton, "Continuous respiratory rate monitoring to detect clinical deteriorations using wearable sensors," Ph.D. Thesis, King’s College London, 2017.This poster was first presented at the Bioengenuity Keynotes Conference, held on Monday 6th March at the University of Oxford

Toward a Robust Estimation of Respiratory Rate From Pulse Oximeters.

GOAL: Current methods for estimating respiratory rate (RR) from the photoplethysmogram (PPG) typically fail to distinguish between periods of high- and low-quality input data, and fail to perform well on independent "validation" datasets. The lack of robustness of existing methods directly results in a lack of penetration of such systems into clinical practice. The present work proposes an alternative method to improve the robustness of the estimation of RR from the PPG. METHODS: The proposed algorithm is based on the use of multiple autoregressive models of different orders for determining the dominant respiratory frequency in the three respiratory-induced variations (frequency, amplitude, and intensity) derived from the PPG. The algorithm was tested on two different datasets comprising 95 eight-minute PPG recordings (in total) acquired from both children and adults in different clinical settings, and its performance using two window sizes (32 and 64 seconds) was compared with that of existing methods in the literature. RESULTS: The proposed method achieved comparable accuracy to existing methods in the literature, with mean absolute errors (median, 25[Formula: see text]-75[Formula: see text] percentiles for a window size of 32 seconds) of 1.5 (0.3-3.3) and 4.0 (1.8-5.5) breaths per minute (for each dataset respectively), whilst providing RR estimates for a greater proportion of windows (over 90% of the input data are kept). CONCLUSION: Increased robustness of RR estimation by the proposed method was demonstrated. SIGNIFICANCE: This work demonstrates that the use of large publicly available datasets is essential for improving the robustness of wearable-monitoring algorithms for use in clinical practice