Evidence that natural selection maintains genetic variation for sleep in Drosophila melanogaster.

BackgroundDrosophila melanogaster often shows correlations between latitude and phenotypic or genetic variation on different continents, which suggests local adaptation with respect to a heterogeneous environment. Previous phenotypic analyses of latitudinal clines have investigated mainly physiological, morphological, or life-history traits. Here, we studied latitudinal variation in sleep in D. melanogaster populations from North and Central America. In parallel, we used RNA-seq to identify interpopulation gene expression differences.ResultsWe found that in D. melanogaster the average nighttime sleep bout duration exhibits a latitudinal cline such that sleep bouts of equatorial populations are roughly twice as long as those of temperate populations. Interestingly, this pattern of latitudinal variation is not observed for any daytime measure of activity or sleep. We also found evidence for geographic variation for sunrise anticipation. Our RNA-seq experiment carried out on heads from a low and high latitude population identified a large number of gene expression differences, most of which were time dependent. Differentially expressed genes were enriched in circadian regulated genes and enriched in genes potentially under spatially varying selection.ConclusionOur results are consistent with a mechanistic and selective decoupling of nighttime and daytime activity. Furthermore, the present study suggests that natural selection plays a major role in generating transcriptomic variation associated with circadian behaviors. Finally, we identified genomic variants plausibly causally associated with the observed behavioral and transcriptomic variation

Determination of the decay exponent in mechanically stirred isotropic turbulence

Direct numerical simulation is used to investigate the decay exponent of isotropic homogeneous turbulence over a range of Reynolds numbers sufficient to display both high and low Re number decay behavior. The initial turbulence is generated by the stirring action of the flow past many small randomly placed cubes. Stirring occurs at 1/30 th of the simulation domain size so that the low-wavenumber and large scale behavior of the turbulent spectrum is generated by the fluid and is not imposed. It is shown that the decay exponent in the resulting turbulence matches the theoretical predictions for a k 2 low-wavenumber spectrum at both high and low Reynolds numbers. The transition from high Reynolds number behavior to low Reynolds number behavior occurs relatively abruptly at a turbulent Reynolds number of around 250 (Re λ

Discrete calculus methods for diffusion,”

Abstract A general methodology for the solution of partial differential equations is described in which the discretization of the calculus is exact and all approximation occurs as an interpolation problem on the material constitutive equations. The fact that the calculus is exact gives these methods the ability to capture the physics of PDE systems well. The construction of both node and cell based methods of first and second-order are described for the problem of unsteady heat conductionthough the method is applicable to any PDE system. The performance of these new methods are compared to classic solution methods on unstructured 2D and 3D meshes for a variety of simple and complex test cases

Genome of Drosophila suzukii, the spotted wing drosophila.

Drosophila suzukii Matsumura (spotted wing drosophila) has recently become a serious pest of a wide variety of fruit crops in the United States as well as in Europe, leading to substantial yearly crop losses. To enable basic and applied research of this important pest, we sequenced the D. suzukii genome to obtain a high-quality reference sequence. Here, we discuss the basic properties of the genome and transcriptome and describe patterns of genome evolution in D. suzukii and its close relatives. Our analyses and genome annotations are presented in a web portal, SpottedWingFlyBase, to facilitate public access

Comparison of nitric oxide measurements in the mesosphere and lower thermosphere from ACE-FTS, MIPAS, SCIAMACHY, and SMR

We compare the nitric oxide measurements in the mesosphere and lower thermosphere (60 to 150 km) from four instruments: ACE-FTS, MIPAS, SCIAMACHY, and SMR. We use the daily zonal mean data in that altitude range for the years 2004-2010 (ACE-FTS), 2005-2012 (MIPAS), 2008-2012 (SCIAMACHY), and 2003-2012 (SMR). We first compare the data qualitatively with respect to the morphology, focussing on the major features, and then compare the time series directly and quantitatively. In three geographical regions, we compare the vertical density profiles on coincident measurement days. Since none of the instruments delivers continuous daily measurements in this altitude region, we carried out a multi-linear regression analysis. This regression analysis considers annual and semi-annual variability in form of harmonic terms and inter-annual variability by responding linearly to the solar Lyman-alpha; radiation index and the geomagnetic Kp index. This analysis helps to find similarities and differences in the individual data sets with respect to the inter-annual variations caused by geomagnetic and solar variability. We find that the data sets are consistent and that they only disagree on minor aspects. SMR and ACE-FTS deliver the longest time series in the mesosphere and they both agree remarkably well. The shorter time series from MIPAS and SCIAMACHY also agree with them where they overlap. The data agree within ten to twenty percent when the number densities are large, but they can differ by 50 to 100% in some cases