472 research outputs found

    Viral forensic genomics reveals the relatedness of classic herpes simplex virus strains KOS, KOS63, and KOS79

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    Herpes simplex virus 1 (HSV-1) is a widespread global pathogen, of which the strain KOS is one of the most extensively studied. Previous sequence studies revealed that KOS does not cluster with other strains of North American geographic origin, but instead clustered with Asian strains. We sequenced a historical isolate of the original KOS strain, called KOS63, along with a separately isolated strain attributed to the same source individual, termed KOS79. Genomic analyses revealed that KOS63 closely resembled other recently sequenced isolates of KOS and was of Asian origin, but that KOS79 was a genetically unrelated strain that clustered in genetic distance analyses with HSV-1 strains of North American/European origin. These data suggest that the human source of KOS63 and KOS79 could have been infected with two genetically unrelated strains of disparate geographic origins. A PCR RFLP test was developed for rapid identification of these strains

    Examining a Peak-Luminosity/Decline-Rate Relationship for Tidal Disruption Events

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    We compare the luminosity, radius, and temperature evolution of the UV/optical blackbodies for 21 well-observed tidal disruption events (TDEs), 8 of which were discovered by the All-Sky Automated Survey for Supernovae. We find that the blackbody radii generally increase prior to peak and slowly decline at late times. The blackbody temperature evolution is generally flat, with a few objects showing small-scale variations. The bolometric UV/optical luminosities generally evolve smoothly and flatten out at late times. Finally, we find an apparent correlation between the peak luminosity and the decline rate of TDEs. This relationship is strongest when comparing the peak luminosity to its decline over 40 days. A linear fit yields log10(Lpeak)=(44.10.1+0.1)+(1.60.2+0.4)(ΔL40+0.5)\log_{10}( L_{peak}) = (44.1^{+0.1}_{-0.1}) + (1.6^{+0.4}_{-0.2})(\Delta L_{40} + 0.5) in cgs, where ΔL40=log10(L40/Lpeak)\Delta L_{40} = \log_{10}(L_{40} / L_{peak}).Comment: 10 pages, 4 figures. Updated to reflect changes made in the published ApJL version. Six new objects added to sample. Updated video description can be found at https://youtu.be/TtZU22eyHv

    Revealing AGNs Through TESS Variability

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    We used Transiting Exoplanet Survey Satellite (TESS) data to identify 29 candidate active galactic nuclei (AGNs) through their optical variability. The high-cadence, high-precision TESS light curves present a unique opportunity for the identification of AGNs, including those not selected through other methods. Of the candidates, we found that 18 have either previously been identified as AGNs in the literature or could have been selected based on emission-line diagnostics, mid-IR colors, or X-ray luminosity. AGNs in low-mass galaxies offer a window into supermassive black hole (SMBH) and galaxy co-evolution and 8 of the 29 candidates have estimated black hole masses 106M\mathrm{\lesssim 10^{6} M_{\odot}}. The low-mass galaxies NGC 4395 and NGC 4449 are two of our five "high-confidence" candidates. By applying our methodology to the entire TESS main and extended mission datasets, we expect to identify \sim45 more AGN candidates, of which \sim26 will be new and \sim8 will be in low-mass galaxies.Comment: 21 pages, 17 figures, 6 tables. Will be submitted to AAS journals. Comments welcom

    Chandra, HST/STIS, NICER, Swift, and TESS Detail the Flare Evolution of the Repeating Nuclear Transient ASASSN-14ko

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    ASASSN-14ko is a nuclear transient at the center of the AGN ESO 253-G003 that undergoes periodic flares. Optical flares were first observed in 2014 by the All-Sky Automated Survey for Supernovae (ASAS-SN) and their peak times are well-modeled with a period of 115.21.2+1.3115.2^{+1.3}_{-1.2} days and period derivative of 0.0026±0.0006-0.0026 \pm 0.0006. Here we present ASAS-SN, Chandra, HST/STIS, NICER, Swift, and TESS data for the flares that occurred in December 2020, April 2021, July 2021, and November 2021. The HST/STIS UV spectra evolve from blue shifted broad absorption features to red shifted broad emission features over \sim10 days. The Swift UV/optical light curves peaked as predicted by the timing model, but the peak UV luminosities varied between flares and the UV flux in July 2021 was roughly half the brightness of all other peaks. The X-ray luminosities consistently decreased and the spectra became harder during the UV/optical rise but apparently without changes in absorption. Finally, two high-cadence TESS light curves from December 2020 and November 2018 showed that the slopes during the rising and declining phases changed over time, which indicates some stochasticity in the flare's driving mechanism. ASASSN-14ko remains observationally consistent with a repeating partial tidal disruption event, but, these rich multi-wavelength data are in need of a detailed theoretical model.Comment: 25 pages, 14 figures, 4 tables; Submitted to ApJ, comments welcom

    An exploratory study looking at the relationship marketing techniques used in the music festival industry

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    There are current issues and trends in the music festival market, which may affect the success of an event, and market saturation is at the forefront of these issues. Previous literature, maintaining the need for a marketing approach to festivals, identifi es the need for maintaining strong stakeholder relationships in order to succeed in a business environment; attention has been focused to the theory of relationship marketing (RM) because of the recognition that this practice is complementary to the marketing of festivals. The very nature of the music festival as an annual, usually, 4-day event means that effective marketing is needed to keep connections with the consumer throughout the year. This article focuses on the RM techniques utilised within the music festival industry from the viewpoint of the festival organiser in an attempt to establish how festival organisations value and monitor organisational relationships. This article explores the extent to which these relationships are valued and managed; furthermore, the variations between these intricate relationships are considered by focusing on those held with the organisation ’ s consumers and sponsors, the results of which have provided the ability to establish the importance and relevance of RM to the industry and further identify the marketing communication methods employed to establish and maintain such relationships. In-depth, convergent interviews have been conducted with a segment of music festival organisers from a range of events. The results have been integrated with the study of current literature to best exemplify these issues. It has been established that RM has a strong role in today ’ s commercial and independent music festival industry; technological advances are enabling the organiser to support online relationships further and increase consumer loyalty. There is a need to expand the research further because of the complexity of organisational relationships and the varying categories of festivals

    ABRF Proteome Informatics Research Group (iPRG) 2016 Study: Inferring Proteoforms from Bottom-up Proteomics Data.

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    This report presents the results from the 2016 Association of Biomolecular Resource Facilities Proteome Informatics Research Group (iPRG) study on proteoform inference and false discovery rate (FDR) estimation from bottom-up proteomics data. For this study, 3 replicate Q Exactive Orbitrap liquid chromatography-tandom mass spectrometry datasets were generated from each of

    Biological controls for standardization and interpretation of adaptive immune receptor repertoire profiling

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    Use of adaptive immune receptor repertoire sequencing (AIRR-seq) has become widespread, providing new insights into the immune system with potential broad clinical and diagnostic applications. However, like many high-throughput technologies, it comes with several problems, and the AIRR Community was established to understand and help solve them. We, the AIRR Community's Biological Resources Working Group, have surveyed scientists about the need for standards and controls in generating and annotating AIRR-seq data. Here, we review the current status of AIRR-seq, provide the results of our survey, and based on them, offer recommendations for developing AIRR-seq standards and controls, including future work. Keywords: B-cell Receptor (BCR); IG; T-cell Receptor (TCR); TR; antibody; immunoglobulin; immunology; inflammation; next generation sequencing (NGS)
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