Lost in translation: data integration tools meet the Semantic Web (experiences from the Ondex project)

More information is now being published in machine processable form on the web and, as de-facto distributed knowledge bases are materializing, partly encouraged by the vision of the Semantic Web, the focus is shifting from the publication of this information to its consumption. Platforms for data integration, visualization and analysis that are based on a graph representation of information appear first candidates to be consumers of web-based information that is readily expressible as graphs. The question is whether the adoption of these platforms to information available on the Semantic Web requires some adaptation of their data structures and semantics. Ondex is a network-based data integration, analysis and visualization platform which has been developed in a Life Sciences context. A number of features, including semantic annotation via ontologies and an attention to provenance and evidence, make this an ideal candidate to consume Semantic Web information, as well as a prototype for the application of network analysis tools in this context. By analyzing the Ondex data structure and its usage, we have found a set of discrepancies and errors arising from the semantic mismatch between a procedural approach to network analysis and the implications of a web-based representation of information. We report in the paper on the simple methodology that we have adopted to conduct such analysis, and on issues that we have found which may be relevant for a range of similar platformsComment: Presented at DEIT, Data Engineering and Internet Technology, 2011 IEEE: CFP1113L-CD

Preliminary results of investigations of possible ground deformation structures in the early christian basilica, ancient Lechaion harbour, Corinth, Greece.

Η Παλαιοχριστιανική Βασιλική Λεχαίου, Κόρινθος, κατασκευάστηκε στα τέλη του 5ου αι. μ.Χ. στον δυτικό βραχίονα του αρχαίου λιμανιού του Λεχαίου, και σύμφωνα με αρχαιολογικές ανασκαφές καταστράφηκε από την σεισμική δραστηριότητα του 551-552 μ.Χ.. Διάσπαρτα βυθίσματα και υβώματα που παρατηρήθηκαν στο δάπεδο της Βασιλικής αποτελούν ενδεικτικές δομές εδαφικής παραμόρφωσης η οποία πιθανόν να σχετίζεται με ρευστοποίηση εδάφους. Με στόχο την διερεύνηση της στρωματογραφίας και της δομής του υπεδάφους πραγματοποιήθηκαν γεωφυσικές διασκοπήσεις GPR και μετρήσεις αγωγιμότητας του εδάφους κατά μήκος δέκα επιλεγμένων τομών και συσχέτιση τους με τη στρωματογραφία όπως αυτή περιγράφεται από αρχαιολογικά σκάμματα. Τα αποτελέσματα της μελέτης είναι ενδεικτικά δομών παραμόρφωσης των υποκείμενων εδαφικών σχηματισμών με χαρακτηριστικά που επιτρέπουν την συσχέτιση των επιφανειακών δομών που παρατηρήθηκαν στο δάπεδο της Βασιλικής με το φαινόμενο της ρευστοποίησης εδάφους.The Early Christian Basilica of Lechaion, Corinth, located on the western jetty of the ancient Lechaion harbour, was constructed during the late 5th century AD and archaeological excavations suggest that it was destroyed by seismic activity during 551-552 AD. Numerous depressions and buckling structures observed on the Basilica floor are indicative of ground deformation structures, likely associated with liquefaction. In an attempt to investigate the subsurface soil structure, and stratigraphy, a GPR survey and horizontal distribution of ground conductivity along ten selected transects was carried out, supplemented by stratigraphic data as described by archaeological trenches. The results of the study revealed subsurface deformation features providing sufficient indications that allow us to suggest that the surface structures observed on the Basilica floor are the surface expression of earthquake-induced ground liquefaction

OnTheFly: a tool for automated document-based text annotation, data linking and network generation

OnTheFly is a web-based application that applies biological named entity recognition to enrich Microsoft Office, PDF and plain text documents. The input files are converted into the HTML format and then sent to the Reflect tagging server, which highlights biological entity names like genes, proteins and chemicals, and attaches to them JavaScript code to invoke a summary pop-up window. The window provides an overview of relevant information about the entity, such as a protein description, the domain composition, a link to the 3D structure and links to other relevant online resources. OnTheFly is also able to extract the bioentities mentioned in a set of files and to produce a graphical representation of the networks of the known and predicted associations of these entities by retrieving the information from the STITCH database

Barriers and facilitators to combined ART initiation in pregnant women with HIV: lessons learnt from a PMTCT B+ pilot program in Swaziland

In January 2013, Swaziland launched a PMTCT B+ implementation study in rural Shiselweni. We aimed to identify patient and health service determinants of combined antiretroviral therapy (ART) initiation, to help guide national implementation of PMTCT B+

Tourism income and economic growth in Greece: Empirical evidence from their cyclical components

This paper examines the relationship between the cyclical components of Greek GDP and international tourism income for Greece for the period 1976–2004. Using spectral analysis the authors find that cyclical fluctuations of GDP have a length of about nine years and that international tourism income has a cycle of about seven years. The volatility of tourism income is more than eight times the volatility of the Greek GDP cycle. VAR analysis shows that the cyclical component of tourism income is significantly influencing the cyclical component of GDP in Greece. The findings support the tourism-led economic growth hypothesis and are of particular interest and importance to policy makers, financial analysts and investors dealing with the Greek tourism industry

T violation and the unidirectionality of time

An increasing number of experiments at the Belle, BNL, CERN, DA{\Phi}NE and SLAC accelerators are confirming the violation of time reversal invariance (T). The violation signifies a fundamental asymmetry between the past and future and calls for a major shift in the way we think about time. Here we show that processes which violate T symmetry induce destructive interference between different paths that the universe can take through time. The interference eliminates all paths except for two that represent continuously forwards and continuously backwards time evolution. Evidence from the accelerator experiments indicates which path the universe is effectively following. This work may provide fresh insight into the long-standing problem of modeling the dynamics of T violation processes. It suggests that T violation has previously unknown, large-scale physical effects and that these effects underlie the origin of the unidirectionality of time. It may have implications for the Wheeler-DeWitt equation of canonical quantum gravity. Finally it provides a view of the quantum nature of time itself.Comment: 24 pages, 5 figures. Final version accepted for publishing in Foundations of Physics. The final publication is available at http://www.springerlink.com/content/y3h4174jw2w78322