Highly tapered pentagonal bipyramidal Au microcrystals with high index faceted corrugation: synthesis and optical properties

Focusing light at sub-wavelength region opens up interesting applications in optical sensing and imaging beyond the diffraction limit. In the past, tapered Au wires with carved gratings have been employed to achieve nanofocusing. The fabrication process however, is expensive and the obtained wires are polycrystalline with high surface roughness. A chemical synthetic method overcoming these hurdles should be an attractive alternative. Here, we report a method to chemically synthesize Au microcrystals (∼10 μm) bearing pentagonal bipyramidal morphology with surface corrugations assignable to high index planes. The method is a single step solid state synthesis at a temperature amenable to common substrates. The microcrystals are tapered at both ends forming sharp tips (∼55 nm). Individual microcrystals have been used as pick and probe SERS substrates for a dye embedded in a polymer matrix. The unique geometry of the microcrystal also enables light propagation across its length

The stilbene biosynthetic pathway and its regulation in Scots pine

Conifers dominate the boreal forests of the Northern Hemisphere, and especially members of the family Pinaceae have great economic and ecological significance. Part of their success is thought to arise from the vast array of secondary metabolites they produce. The products of secondary metabolism are essential for plants to survive in the ever-changing environment. In Scots pine (Pinus sylvestris L.), two groups of secondary metabolites, stilbenes and resin acids, are crucial for decay resistance of heartwood timber and for active defense responses against herbivores and fungal pathogens. Several studies have shown that stilbenes improve decay resistance of pine heartwood. Since there is wide variation in the concentration of stilbenes between individuals and the trait has high heritability, it may be possible to breed heartwood that is more decay-resistant. However, breeding for heartwood properties is slow, since the decay resistance characteristics can be estimated at the earliest from 30-year-old trees. Early selection methods utilizing genetic markers or chemical screening are needed, but we do not yet understand which genes control the biosynthesis of stilbenes and what the genetic differences are between individuals that explain the variation in the capacity to produce stilbenes. Importantly, there is genetic correlation between stress-induced stilbene biosynthesis in seedlings and the heartwood stilbene content in their adult mother trees. Here, we examined the pine transcriptional responses under two conditions that were previously known to activate stilbene biosynthesis: heartwood formation in adult trees and ultraviolet (UV)-C treatment of needles in seedlings. We found that these two conditions had very little in common, except for the activation of stilbene pathway genes. For example, the regulators of the two responses seemed not to be shared. The activation of the stilbene pathway in response to UV-C treatment occurred a few hours after the onset of the treatment and was independent of translation. Stilbene biosynthesis seems to be an early defense response in Scots pine. Heartwood formation, an important developmental process in the senescence of secondary xylem, is poorly understood. Based on transcriptomic analysis, stilbene biosynthesis occurs in situ in the transition zone between the sapwood and heartwood, but resin acids were synthesized primarily in the sapwood. Bifunctional nuclease, an enzyme involved in the process of developmentally programmed cell death (dPCD), is a useful marker for heartwood formation and aided us in defining the timing of the process, from spring to late autumn. Expression of this marker, which is strictly confined to dPCD conditions, further clarified that heartwood formation truly is a process that is initiated by intrinsic programming instead of environmental cues. The transcriptomic data revealed that the expression of the previously characterized pinosylvin O-methyltransferase gene, PMT1, was not induced under stilbene-forming conditions. A new PMT-encoding gene, PMT2, was identified by coexpression analysis. The gene showed an inducible expression pattern very similar to that of the stilbene synthase gene under all conditions studied. PMT2 furthermore methylated pinosylvin with high specificity, in contrast to PMT1, which accepted several substrates.Pohjoisen pallonpuoliskon kasvillisuus on havumetsien hallitsemaa ja etenkin mäntykasvien (Pinaceae) heimoon kuuluu taloudellisesti ja ekologisesti merkittäviä lajeja. Yksi selitys havupuiden menestykselle saattaa olla niiden kyky tuottaa laaja kirjo erilaisia sekundaariyhdisteitä. Männyn (Pinus sylvestris L.) tärkeimpiin sekundaariyhdisteisiin kuuluvat stilbeenit ja terpeenit toimivat puolustuksessa tuholaisia ja patogeenejä vastaan. Aikaisemmat tutkimukset ovat osoittaneet, että aktiivisen puolustuksen lisäksi etenkin stilbeenit parantavat männyn sydänpuun lahonkestävyyttä. Sydänpuun stilbeenien määrä vaihtelee huomattavasti yksilöiden välillä ja ominaisuus on periytyvä, mikä mahdollistaa sydänpuun lahonkestävyyden parantamisen jalostuksen keinoin. Sydänpuun laatuominaisuuksien jalostus on kuitenkin hidasta ja varhaisvalintaan soveltuvien geenimerkkien tunnistaminen nopeuttaisi jalostusprosessia. Emme kuitenkaan vielä tiedä, mitkä geenit säätelevät stilbeenien biosynteesiä ja selittävät erot sydänpuun stilbeenien määrässä. Stilbeenien tuotanto käynnistyy erilaisten stressitekijöiden vaikutuksesta neulasissa ja mantopuussa. Indusoituva tuotanto korreloi sydänpuun stilbeenien määrän kanssa ja tätä voidaan mahdollisesti hyödyntää kemiallisessa seulonnassa taimien varhaisvalinnassa. Tässä väitöskirjassa tutkittiin muutoksia männyn transkriptomissa sydänpuun muodostumisen aikana ja UV-C käsittelyn seurauksena. Stilbeenien biosynteesireitin entsyymejä koodavat geenit aktivoituivat kummassakin tapauksessa, mutta muuten transkriptomeilla oli hyvin vähän yhteistä. Esimerkiksi yhteisiä transkriptiota sääteleviä tekijöitä ei löydetty ja vaikuttaakin siltä, että eri transkriptiofaktorit säätelevät stilbeenien biosynteesireittiä sydänpuun kehityksen aikana ja stressitekijöiden vaikutuksesta. Sydänpuun muodostumisen aikana puussa tapahtuvat kemialliset ja rakenteelliset muutokset tunnetaan joillakin lajeilla hyvin, mutta itse prosessin ajoittuminen sekä käynnistymiseen ja säätelyyn vaikuttavat tekijät ovat vielä suurelta osin tuntemattomia. Stilbeenin biosynteesistä vastaavat geenit ilmenivät vaihettumisvyöhykkeellä mantopuun ja sydänpuun välissä, jossa sydänpuun muodostuminen käynnistyy ja näin tukee aiempaa käsitystä stilbeenien in situ biosynteesistä. Hartsihappojen biosynteesistä vastaavat geenit taas ilmenivät lähinnä mantopuussa, jolloin ne todennäköisesti kuljetetaan vaihettumisvyöhykkeelle sen ulkopuolelta. Ohjelmoidulla solukuolemalla on suuri merkitys sekä kasvin kehityksessä, että stressivasteissa. Bifunktionaalinen nukleaasi (BFN) on entsyymi, joka on yhdistetty aiemmissa tutkimuksissa spesifisesti kasvien kehityksellisiin tapahtumiin. Entsyymiä koodaavan geenin havaittiin ilmenevän ainoastaan vaihettumisvyöhykkeellä. Tämä tukee hypoteesia, jonka mukaan sydänpuun muodostuminen on sisäisesti säädelty eikä ympäristötekijöiden laukaisema tapahtuma. Bifunktionaalinen nukleaasi toimi myös hyödyllisenä markkerina sydänpuun muodostumisen ajoittamisessa keväästä myöhäiseen syksyyn. Transkriptiodata paljasti, että aiemmin tunnistettu stilbeenireitin viimeistä reaktiota katalysoiva metyylitransferaasientsyymiä (PMT1) koodaava geeni ei indusoitunut tutkituissa stilbeenejä tuottavissa olosuhteissa. Tunnistimme uuden metyylitransferaasia koodaavan geenin (PMT2), jonka ekspressioprofiili vastasi stilbeenireitin toisen entsyymin, stilbeenisyntaasin ekspressiota kaikissa tutkituissa olosuhteissa. PMT2 metyloi spesifisesti pinosylviiniä kun taas PMT1 metyloi stilbeenien lisäksi useita rakenteellisesti erilaisia substraatteja

Accreting Millisecond X-Ray Pulsars

Accreting Millisecond X-Ray Pulsars (AMXPs) are astrophysical laboratories without parallel in the study of extreme physics. In this chapter we review the past fifteen years of discoveries in the field. We summarize the observations of the fifteen known AMXPs, with a particular emphasis on the multi-wavelength observations that have been carried out since the discovery of the first AMXP in 1998. We review accretion torque theory, the pulse formation process, and how AMXP observations have changed our view on the interaction of plasma and magnetic fields in strong gravity. We also explain how the AMXPs have deepened our understanding of the thermonuclear burst process, in particular the phenomenon of burst oscillations. We conclude with a discussion of the open problems that remain to be addressed in the future.Comment: Review to appear in "Timing neutron stars: pulsations, oscillations and explosions", T. Belloni, M. Mendez, C.M. Zhang Eds., ASSL, Springer; [revision with literature updated, several typos removed, 1 new AMXP added

The United States COVID-19 Forecast Hub dataset

Academic researchers, government agencies, industry groups, and individuals have produced forecasts at an unprecedented scale during the COVID-19 pandemic. To leverage these forecasts, the United States Centers for Disease Control and Prevention (CDC) partnered with an academic research lab at the University of Massachusetts Amherst to create the US COVID-19 Forecast Hub. Launched in April 2020, the Forecast Hub is a dataset with point and probabilistic forecasts of incident cases, incident hospitalizations, incident deaths, and cumulative deaths due to COVID-19 at county, state, and national, levels in the United States. Included forecasts represent a variety of modeling approaches, data sources, and assumptions regarding the spread of COVID-19. The goal of this dataset is to establish a standardized and comparable set of short-term forecasts from modeling teams. These data can be used to develop ensemble models, communicate forecasts to the public, create visualizations, compare models, and inform policies regarding COVID-19 mitigation. These open-source data are available via download from GitHub, through an online API, and through R packages

Pulsar Wind Nebulae with Bow Shocks: Non-thermal Radiation and Cosmic Ray Leptons

Pulsars with high spin-down power produce relativistic winds radiating a non-negligible fraction of this power over the whole electromagnetic range from radio to gamma-rays in the pulsar wind nebulae (PWNe). The rest of the power is dissipated in the interactions of the PWNe with the ambient interstellar medium (ISM). Some of the PWNe are moving relative to the ambient ISM with supersonic speeds producing bow shocks. In this case, the ultrarelativistic particles accelerated at the termination surface of the pulsar wind may undergo reacceleration in the converging flow system formed by the plasma outflowing from the wind termination shock and the plasma inflowing from the bow shock. The presence of magnetic perturbations in the flow, produced by instabilities induced by the accelerated particles themselves, is essential for the process to work. A generic outcome of this type of reacceleration is the creation of particle distributions with very hard spectra, such as are indeed required to explain the observed spectra of synchrotron radiation with photon indices Γ≲ 1.5. The presence of this hard spectral component is specific to PWNe with bow shocks (BSPWNe). The accelerated particles, mainly electrons and positrons, may end up containing a substantial fraction of the shock ram pressure. In addition, for typical ISM and pulsar parameters, the e+ released by these systems in the Galaxy are numerous enough to contribute a substantial fraction of the positrons detected as cosmic ray (CR) particles above few tens of GeV and up to several hundred GeV. The escape of ultrarelativistic particles from a BSPWN—and hence, its appearance in the far-UV and X-ray bands—is determined by the relative directions of the interstellar magnetic field, the velocity of the astrosphere and the pulsar rotation axis. In this respect we review the observed appearance and multiwavelength spectra of three different types of BSPWNe: PSR J0437-4715, the Guitar and Lighthouse nebulae, and Vela-like objects. We argue that high resolution imaging of such objects provides unique information both on pulsar winds and on the ISM. We discuss the interpretation of imaging observations in the context of the model outlined above and estimate the BSPWN contribution to the positron flux observed at the Earth

Nanogranular Au films deposited on carbon covered Si substrates for enhanced optical reflectivity and Raman scattering

Electroless deposition of gold has been carried out on Si(100) surfaces precoated with laser ablated carbon layers of different thicknesses, and the resulting substrates have been characterized by a host of techniques. We first established the porous nature of the amorphous carbon layer by Raman and profilometric measurements. The Au uptake from the plating solution was optimal at a carbon layer thickness of 90 nm, where we observed nanogranules of ∼60–70 nm, well separated from each other in the carbon matrix (mean interparticle spacing ∼7 nm). We believe that the observed nanostructure is a result of Au³⁺ electroless reduction on the Si surface through porous channels present in the amorphous carbon matrix. Importantly, this nanostructured substrate exhibited high reflectivity in the near IR region besides being effective as a substrate for surface enhanced Raman scattering (SERS) measurements with enhancement factors up to 10⁷

Calcifying cystic odontogenic tumor associated with ameloblastoma – A rare histological variant

Calcifying odontogenic cysts (COCs) represent a heterogeneous group of lesions that exhibits a variety of clinical, behavioral, and histological features. COC or Gorlin's cyst is now classified by the World Health Organization as a tumor. Calcifying cystic odontogenic tumor (CCOT) is an uncommon developmental odontogenic lesion that demonstrates histopathologic diversity. Odontogenic tumors such as ameloblastoma have been reported to be associated with CCOT. In this paper, we report a case of ameloblastomatous CCOT in a 16-year-old girl with involvement of mandibular posterior region, which is an extremely rare histologic variant

Global distribution of tropospheric ozone and its precursors: a view from space

Satellite-borne tropospheric ozone measurements obtained from the tropospheric ozone residual (TOR) method, CO from the MOPITT (at 850 hPa level) measurements and NO2 from the SCIAMACHY measurements for the three-year period 2003–2005 have been utilized to examine the distribution of the pollutant sources and long-range transport on a global scale. Elevated tropospheric ozone columns have been observed over regions of high NO2 and CO concentrations in the northern and southern hemispheres. High levels of the tropospheric ozone column have been observed below about 5°S in the vicinity of the biomass burning regions and extend from continents out over the Atlantic during October. The seasonal distribution of tropospheric O3 and its precursors in the southern hemisphere shows the strong correlation with the seasonal variation of biomass burning in Africa and South America. Northern hemisphere summer shows the widespread ozone and CO pollution throughout the middle latitudes. The inter-hemispheric gradient of ozone and CO found to be decreased during October. Large-scale transport of the ozone and CO over the Atlantic and Pacific Oceans has been clearly identified. Strong inter-continental transport has been observed to occur from west to east along with the mid-latitude winds in the northern hemisphere