DRYAD primers and 454 sequences for additional sparid loci

File 3 Primers and 454 sequences for additional sparid loci: Excel spreadsheet of additional microsatellite markers identified in two focal sparid species from two repeat enrich libraries (using the FIASCO protocol) and a fraction of 454 sequencing. The table includes repeat type, primers, fragment size and the 454 sequences in FASTA format

Friends&Family_genotypedata

Microsatellite genotype data of Cape buffalo (Syncerus caffer caffer) that was used in the analyses of the manuscript "Friends and Family: A software program for identification of unrelated individuals from molecular marker data"

DRYAD location information of species

File 2 Location information of species: Excel spreadsheet of specimens used and locations sampled for the microsatellite marker development and cross-species amplification study

raw_RAD_data_replicated_samples

This archive contains the raw RAD sequencing data files in paired-end FastQ format for the two replicated Labeobarbus natalensis samples used in the study, BLU004 (BLA004) and KNU017 (KNB017). Sequence data was generated by an Illumina HiSeq 2000. This data has not undergone initial filtering by the sequencing company. FastQ files are in the standard format, with all barcodes and adapters trimmed (apart from any pollution due to overlap). The two samples are presented differently - for more information please refer to the ReadMe and the publication

final_dataset_and_input_files

This archive contains several output files from Stacks for the final dataset of 723 SNPs across 23 samples of Labeobarbus natalensis. We also include input files for each of the downstream analysis programs used in this study for the final dataset. The formats given include .arp, .genepop, .gtx, .structure, .vcf and .geste. For a more detailed breakdown of each file, please refer to the ReadMe

Anthropogenic movement results in hybridisation in impala in southern Africa - Supplementary Material

Supplementary material to accompany the scientific publication: "Anthropogenic movement results in hybridisation in impala in southern Africa" which can be found here:https://doi.org/10.1007/s10592-020-01276-4</div

Distribution of morphological measurements by sex.

<p>Body length (a) and body mass (b) distributions for sampled male (grey) and female (white) Cape dune mole-rats, <i>B. suillus</i>.</p

Map of <i>B. suillus</i> individuals sampled.

<p>The south-eastern study area is Region 1 showing study females (filled grey circles, solid lines) and potential sires (black diamonds). Region 2 is the northern study area showing study females (filled grey circles, dashed lines) and potential sires (black squares). Tarred runways and access roads representing potential barriers to subterranean movement are represented by dashed lines. Sampled individuals not genotyped are also shown (small unfilled circles).</p

Genetic summary statistics for <i>B.suillus</i> individuals for region 1, region 2, and total adults (including both regions and transient males).

<p>Expected and observed heterozygosity (H_E, H_O), and number of alleles per locus (A).</p

Microsatellite data for lions on small reserves in South Africa

Data were prepared in Microsoft Excel. All samples are held at the Veterinary Genetics Laboratory, University of Pretoria, Onderstepoort, South Africa. The ItemID refers to a unique number for each sample on the database. The "Analysis" column refers to the two separate analyses run in the paper: the "Microsatellite cluster analyses" on "pure" populations (Reference Population analysis or RP) and "Assignment testing and levels of mixing" reserve animal dataset (Small Reserves analysis or SR). Some of this data was previously deposited with Dryad (http://dx.doi.org/10.5061/dryad.f61vq) and is indicated in the column "Used in previous publication"