RRL: A Rich Representation Language for the Description of Agent Behaviour in NECA

In this paper, we describe the Rich Representation Language (RRL) which is used in the NECA system. The NECA system generates interactions between two or more animated characters. The RRL is a formal framework for representing the information that is exchanged at the interfaces between the various NECA system modules

The application of compound-specific sulfur isotopes to the oil–source rock correlation of Kurdistan petroleum

The concentrations and δ34S values of thioaromatic compounds of a suite of oils from several major oil fields in Kurdistan and their corresponding regional Type II-S source rocks have been measured to investigate their source relationship. The oils of three fields (Khabbaz, Jambur, Ajeel) and the bitumen extracted from specific rock formations (Alan, Sargelu, Naokelekan, Chia Gara) showed particularly high abundances of thioaromatics consistent with a carbonate source deposited in a restricted sulfate-rich marine platform setting. The δ34S [V-CDT] values of the major organosulfur compounds (OSCs) in these petroleum samples were measured with a gas chromatograph coupled to a multi-collector inductively coupled plasma mass spectrometer. δ34S values of dibenzothiophenes and methyldibenzothiophenes were consistently in the range −4‰ to −12‰ and −9‰ to −18‰ for the oils and rocks, respectively. Separate groupings of oils and rocks were distinguishable by > 2‰ difference, given an analytical reproducibility of < 0.8‰. OSCs from rocks were consistently ∼2–4‰ depleted than in oils, reflecting a similar trend to previous bulk δ34S studies from which an initial evolution of 34S depleted H2S during diagenesis and thermal maturation had been proposed. Distinctive δ34SOSC data of the oils and rocks with particularly high thioaromatic abundances did suggest several oils–source rock relationships: the Ajeel and Jambur oils and sediments from the Chia Gara formation yielded relatively enriched δ34SOSC values, whereas consistently depleted δ34SOSC values were observed for the Khabbaz oil and Naokelekan source rocks. Results suggest that compound-specific S isotope analysis can help establish oil–source rock relationships of S-rich petroleum

Mantık ve Konuşma

Grice bu yazıda temel olarak sezdirim kavramını incelemektedir. Sezdirim bir karşılıklı konuşmada konuşucunun, söylediği şey ötesinde dinleyicisine aktardığı düşüncedir. Konuşma sezdirimleri söz konusu olduğunda dinleyici, bir çıkarım sonucunda sezdirimleri saptar. Grice'ın savı, bu çıkarımda nicelik, nitelik, bağıntı ve tarz olmak üzere dört grupta toplanabilen ilkelerin (maksimler) belirleyici rol oynadığıdır

New aspects of sulfur biogeochemistry during ore deposition from δ34S of elemental sulfur and organic sulfur from the Here's Your Chance Pb/Zn/Ag deposit

Sulfur isotope studies of base metal sulfide deposits have mostly focussed on sulfide minerals, but elemental sulfur and organic sulfur are also potentially significant components of the sulfur cycle during ore deposition. The δ34S of elemental sulfur and organic sulfur isolated from the Paleoproterozoic Here's Your Chance (HYC) Pb/Zn/Ag deposit (McArthur Basin, northern Australia) were measured to be between + 5 and + 8‰, approximately 6 to 7‰ heavier than the median values of first-generation HYC sulfides. Elemental sulfur and organic sulfur are thought to have been formed contemporaneously with the first generation of metal sulfides. The δ34S of organic sulfur showed an increasing trend along the path of the mineralising fluid, as sulfate was progressively 34S-enriched due to Rayleigh distillation. The δ34S data support a model in which bacterial sulfate reduction produced dissolved sulfide with δ34S of 0 to + 5‰. The subsequent oxidation of sulfide produced reactive sulfur species such as polysulfide ions, which were then incorporated into organic matter

Lipid Biomarker and Isotopic Study of Community Distribution and Biomarker Preservation in a Laminated Microbial Mat from Shark Bay, Western Australia

Modern microbial mats from Shark Bay present some structural similarities with ancient stromatolites; thus, the functionality of microbial communities and processes of diagenetic preservation of modern mats may provide an insight into ancient microbial assemblages and preservation. In this study, the vertical distribution of microbial communities was investigated in a well-laminated smooth mat from Shark Bay. Biolipid and compound-specific isotopic analyses were performed to investigate the distribution of microbial communities in four distinct layers of the mat. Biomarkers indicative of cyanobacteria were more abundant in the uppermost oxic layer. Diatom markers (e.g. C25 HBI alkene, C20:4ω6 and C20:5ω3 polar lipid fatty acids (PLFAs)) were also detected in high abundance in the uppermost layer, but also in the deepest layer under conditions of permanent darkness and anoxia, where they probably used NO3 − for respiration. CycC19:0, an abundant PLFA of purple sulfur bacteria (PSB), was detected in all layers and presented the most 13C-depleted values of all PLFAs, consistent with photoautotrophic PSB. Sulfur-bound aliphatic and aromatic biomarkers were detected in all layers, highlighting the occurrence of early sulfurisation which may be an important mechanism in the sedimentary preservation of functional biolipids in living and, thus, also ancient mats

Regional manifestation of the widespread disruption of soil-landscapes by the 4kyr BP impact-linked dust event using pedo-sedimentary micro-fabrics

The co-occurrence of a sharp dust peak, low lake levels, forest reduction, and ice retreat at ca. 4-kyr BP throughout tropical Africa and West Asia have been widely explained as the effect of an abrupt climate change. The detailed study of soils and archaeological records provided evidence to re-interpret the 4 kyr BP dust event linked rather to the fallback of an impact-ejecta, but not climate change. Here we aim to further investigate the exceptional perturbation of the soil-landscapes widely initiated by the 4 kyr BP dust event. Results are based on soil data from the eastern Khabur basin (North-East Syria), the Vera Basin (Spain), and the lower Moche Valley (West Peru) compared with a new study at the reference site of Ebeon (West France). The quality of the 4 kyr BP dust signal and the related environmental records are investigated through a micromorphological study of pedo-sedimentary micro-fabrics combined with SEM-microprobe, mineralogical, and geochemical analyses.In the four regions studied, the intact 4 kyr BP signal is identifi ed as a discontinuous burnt soil surface with an exotic dust assemblage assigned to the distal fallout of an impact-ejecta. Its unusual two-fold micro-facies is interpreted as (1) flash heating due to pulverization of the hot ejecta cloud at the soil surface, and (2) high energy deflation caused by the impact-related air blast. Disruption of the soil surface is shown to have been rapidly followed by a major de-stabilisation of the soil cover. Local factors and regional settings have exerted a major control on the timing, duration, and magnitude of landscape disturbances. Studies showed how a high quality signal allows to discriminate the short-term severe landscape disturbances linked to the exceptional 4 kyr BP dust event from more gradual environmental changes triggered by climate shift at the same time

Salinity variations in the northern Coorong Lagoon, South Australia: Significant changes in the ecosystem following human alteration to the natural water regime

European settlement and drought have significantly impacted the hydrology of the Coorong, a shallow coastal lagoon complex in South Australia, which is part of a terminal wetland at the mouth of the River Murray. An increased salinity associated with lower water levels and progressive isolation from ocean flushes contributed to a severe decline in ecological diversity over the past decades. Here we have conducted a molecular and stable isotopic study of a sedimentary core from the northern Coorong Lagoon spanning more than 5000 years to investigate the recent palaeoenvironmental history of the ecosystem. Major alterations were evident in many biogeochemical parameters in sediments deposited after the 1950s coinciding with the beginning of intensified water regulations. The most prominent shift occurred in δ13C profiles of C21–C33n-alkanes from average values of −23.5‰ to an average of −28.2‰.Further changes included decreases in carbon preference index (CPI) and average chain length (ACL) of the n-alkane series as well as significant increases in algal (e.g. C20 HBI, long chain alkenes and C29-alkadiene) and bacterial (e.g. 13C depleted short chain n-alkanes and hopanoids, δ13C: −35.9‰ to −30.1‰) derived hydrocarbons. Long chain n-alkanes with a strong odd/even predominance as observed here are typically attributed to terrigenous plants. In the Coorong however, terrigenous input to sedimentary OM is only minor. Therefore changes in the before mentioned parameters were attributed to a source transition from a major contribution of macrophytes towards predominantly microalgae and bacteria.δD values of C21–C33n-alkanes showed a general trend towards more enriched values in younger sediments, indicating an overall rising salinity. However, the most pronounced positive shift in these profiles again occurred after the 1950s. Altogether this study demonstrates that the recent human induced changes of the Coorong hydrology, compounded by a severe drought led to an increase in salinity and alterations of primary production which have been much more significant than natural variations occurring throughout the Holocene over several thousands of years

Characterizations and comparison of low sulfur fuel oils compliant with 2020 global sulfur cap regulation for international shipping

© The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Nelson, R. K., Scarlett, A. G., Gagnon, M. M., Holman, A. I., Reddy, C. M., Sutton, P. A., & Grice, K. Characterizations and comparison of low sulfur fuel oils compliant with 2020 global sulfur cap regulation for international shipping. Marine Pollution Bulletin, 180, (2022): 113791, https://doi.org/10.1016/j.marpolbul.2022.113791.The International Marine Organization 2020 Global Sulfur Cap requires ships to burn fuels with <0.50% S and some countries require <0.10% S in certain Sulfur Emission Control Areas but little is known about these new types of fuels. Using both traditional GC–MS and more advanced chromatographic and mass spectrometry techniques, plus stable isotopic, δ13C and δ2H, analyses of pristane, phytane and n-alkanes, the organic components of a suite of three 0.50% S and three 0.10% S compliant fuels were characterized. Two oils were found to be near identical but all of the remaining oils could be forensically distinguished by comparison of their molecular biomarkers and by the profiles of the heterocyclic parent and alkylated homologues. Oils could also be differentiated by their δ13C and δ2H of n-alkanes and isoprenoids. This study provides important forensic data that may prove invaluable in the event of future oil spills.This research did not receive any specific grant from funding agencies in the public, commercial, or not-for-profit sectors. CMR and RKN were supported by the National Science Foundation (OCE-1634478 and OCE-1756242). GC × GC analysis support provided by WHOI's Investment in Science Fund

A cis-Acting Element in Retroviral Genomic RNA Links Gag-Pol Ribosomal Frameshifting to Selective Viral RNA Encapsidation

SummaryDuring retroviral RNA encapsidation, two full-length genomic (g) RNAs are selectively incorporated into assembling virions. Packaging involves a cis-acting packaging element (Ψ) within the 5′ untranslated region of unspliced HIV-1 RNA genome. However, the mechanism(s) that selects and limits gRNAs for packaging remains uncertain. Using a dual complementation system involving bipartite HIV-1 gRNA, we observed that gRNA packaging is additionally dependent on a cis-acting RNA element, the genomic RNA packaging enhancer (GRPE), found within the gag p1-p6 domain and overlapping the Gag-Pol ribosomal frameshift signal. Deleting or disrupting the two conserved GRPE stem loops diminished gRNA packaging and infectivity >50-fold, while deleting gag sequences between Ψ and GRPE had no effect. Downregulating the translation termination factor eRF1 produces defective virus particles containing 20 times more gRNA. Thus, only the HIV-1 RNAs employed for Gag-Pol translation may be specifically selected for encapsidation, possibly explaining the limitation of two gRNAs per virion