Efficient transfer entropy analysis of non-stationary neural time series

Information theory allows us to investigate information processing in neural systems in terms of information transfer, storage and modification. Especially the measure of information transfer, transfer entropy, has seen a dramatic surge of interest in neuroscience. Estimating transfer entropy from two processes requires the observation of multiple realizations of these processes to estimate associated probability density functions. To obtain these observations, available estimators assume stationarity of processes to allow pooling of observations over time. This assumption however, is a major obstacle to the application of these estimators in neuroscience as observed processes are often non-stationary. As a solution, Gomez-Herrero and colleagues theoretically showed that the stationarity assumption may be avoided by estimating transfer entropy from an ensemble of realizations. Such an ensemble is often readily available in neuroscience experiments in the form of experimental trials. Thus, in this work we combine the ensemble method with a recently proposed transfer entropy estimator to make transfer entropy estimation applicable to non-stationary time series. We present an efficient implementation of the approach that deals with the increased computational demand of the ensemble method's practical application. In particular, we use a massively parallel implementation for a graphics processing unit to handle the computationally most heavy aspects of the ensemble method. We test the performance and robustness of our implementation on data from simulated stochastic processes and demonstrate the method's applicability to magnetoencephalographic data. While we mainly evaluate the proposed method for neuroscientific data, we expect it to be applicable in a variety of fields that are concerned with the analysis of information transfer in complex biological, social, and artificial systems.Comment: 27 pages, 7 figures, submitted to PLOS ON

Trends and uptake of new formulations of controlled-release oxycodone in Canada

Purpose: This study investigated the impact of changing availability of tamper‐deterrent and non‐tamper‐deterrent oxycodone on prescribing patterns of controlled‐release oxycodone across Canada. Methods: We conducted a population‐based, serial cross‐sectional study of controlled‐release oxycodone dispensing from community pharmacies across Canada between October 2007 and April 2016. We calculated rates of dispensing (tablets per 100 population) and reported the relative market share of generic non‐tamper‐deterrent controlled‐release oxycodone. All analyses were reported nationally and stratified by province. Results: After the introduction of a tamper‐deterrent formulation, the national rate of controlled‐release oxycodone dispensing fell by 44.6% (from 26.4 to 14.6 tablets per 100 population from February 2012 to April 2016). Between December 2012 and July 2013, there was moderate uptake of generic non‐tamper‐deterrent controlled‐release oxycodone (968 452 tablets; 16.0% in July 2013), which appeared to have little impact on the overall rate of controlled‐release oxycodone dispensing in Canada. However, the uptake of generic non‐tamper‐deterrent oxycodone varied considerably by province. By April 2016, 55.0% of all controlled‐release oxycodone tablets dispensed in Quebec were for the generic formulation. […

The relationship between mirror-touch synaesthesia and empathy: new evidence and a new screening tool

People with mirror-touch synaesthesia (MTS) report experiencing tactile sensations on their own body when seeing another person being touched. Although this has been associated with heightened empathy and emotion perception, this finding has recently been disputed. Here, we conduct two experiments to explore this relationship further. In Study 1, we develop a new screening measure for MTS. We show that MTS is related to vicarious experiences more generally (including to itch and pain), but is not a simple exaggerated version of normality. For example, people with MTS report videos of scratching as ‘touch’ rather than ‘itchiness’ and have localized sensations when watching others in pain. In Study 2, we show that MTS is related to increased emotional empathy to others and better ability to read facial expressions of emotion, but other measures of empathy are normal-to-low. In terms of theoretical models, we propose that this is more consistent with a qualitative difference in the ability to selectively inhibit the other and attending to the self, which leads to heightened activity in shared self-other representations (including a mirror system for touch, but also includes other kinds of vicarious experience)

The ciliary machinery is repurposed for T cell immune synapse trafficking of LCK

Upon engagement of the T cell receptor with an antigen-presenting cell, LCK initiates TCR signaling by phosphorylating its activation motifs. However, the mechanism of LCK activation specifically at the immune synapse is a major question. We show that phosphorylation of the LCK activating Y394, despite modestly increasing its catalytic rate, dramatically focuses LCK localization to the immune synapse. We describe a trafficking mechanism whereby UNC119A extracts membrane-bound LCK by sequestering the hydrophobic myristoyl group, followed by release at the target membrane under the control of the ciliary ARL3/ARL13B. The UNC119A N terminus acts as a “regulatory arm” by binding the LCK kinase domain, an interaction inhibited by LCK Y394 phosphorylation, thus together with the ARL3/ARL13B machinery ensuring immune synapse focusing of active LCK. We propose that the ciliary machinery has been repurposed by T cells to generate and maintain polarized segregation of signals such as activated LCK at the immune synapse

An Assessment of Song Admixture as an Indicator of Hybridization in Black-capped Chickadees (Poecile atricapillus) and Carolina Chickadees (Poecile carolinensis)

Vocal admixture often occurs where differentiated populations or species of birds meet. This may entail song sympatry, bilingually singing birds, and songs with intermediate or atypical characteristics. Different levels of vocal admixture at the range interface between Black-capped Chickadees (Poecile atricapillus) and Carolina Chickadees (P. carolinensis) have been interpreted as indicating that hybridization is frequent at some locations but not others. However, song ontogeny in these birds has a strong nongenetic component, so that inferences regarding hybridization based on vocal admixture require confirmation. We used diagnostic genetic markers and quantitative analyses of song to characterize population samples along two transects of the chickadee contact zone in the Appalachian Mountains. More than 50% of individuals at the range interface were of hybrid ancestry, yet only 20% were observed to be bilingual or to sing atypical songs. Principal component analysis revealed minimal song intermediacy. This result contrasts with an earlier analysis of the hybrid zone in Missouri that found considerable song intermediacy. Re-analysis of the Missouri data confirmed this difference. Correlation between an individual\u27s genetic composition and its song type was weak in Appalachian hybrid populations, and genetic introgression in both forms extended far beyond the limits of vocal admixture. Therefore, song is not a reliable indicator of levels of hybridization or genetic introgression at this contact zone. Varying ecological factors may play a role in producing variable levels of song admixture in different regions of the range interface