Plant species colonization in newly created road habitats of South Korea: insights for more effective restoration

Despite the advances in restoration methods for newly created road habitats such as roadcuts and embankments, implementation in different parts of the world is limited by high cost and lack of knowledge of naturally formed plant communities. However, a cheaper alternative is to relay in natural successional process in sites under optimal conditions. Thus, the first steps should focus on identifying plant species that colonize roadways and road habitats as well as optimal colonization sites. Our study aimed to describe species composition, exotic species presence, and diversity among four roadways (Jeongok-Youngjung, JG; Seolma-Gueup, SM; Singal, SG; and Samga-Daechon, DC) and three habitat types (embankments, plain areas, and roadcuts) in South Korean peninsula. The effect of some environmental factors on plant composition was also examined (soil type, soil slope, and surrounding landscape). Our results showed that established plant species composition was influenced by the interaction between roadways and habitats types, which was also the main interaction affecting plant richness and evenness. Surprisingly, environmental variables had no effect on plant species composition, with a residual amount of explained variation. A total of 48 plant species were described as indicator of different roadways and habitat types, and 50% of them were invasive or cultivated species. It appeared that different regional-dependent processes, such as northern vs. southern roadways, interact with local process in new-road habitats, producing complex patterns of plant species colonization and composition. Thus, ecological restoration solutions should be targeted at site-specific needs (local) while taking into consideration the differences between northern and southern roadways (regional). Here, regional-pool and local-constraints interaction controls plant composition and diversity during road construction in South Korea. Finally, new restoration actions should be based on plant species that have been established spontaneously in these degraded areas.This work was supported by a grant from the National Institute of Ecology (NIE), funded by the Ministry of Environment (MOE), Republic of Korea (NIE-C-2018-04). JGA was supported by a Ramón y Cajal fellowship of the Ministry of Economy, Industry and Competitiveness, Spain (RYC-2016-20528)

Identification of restoration species for early roadcut slope regeneration using functional group approach

Current restoration protocols for roadside cut slopes in South Korea involve hydroseeding with exotic species to achieve early greening and soil stabilization. However, exotic species can negatively affect adjacent native ecosystems. This study investigated the functional traits of early colonizers in slope restoration and surrounding environments to inform restoration methods that generate similar communities as those of native ecosystems. Slope vegetation (species density, species cover, upperstory species, canopy cover) and environment (aspect, angle, soil properties) were surveyed from the road edge to the forest boundary, and were classified as three distinct zones: a hydroseeded slope, a transition zone, and the forest edge. Naturally occurring species were classified into functional groups to examine dominant traits during early colonization. Hemicryptophyte or geophyte forest species and forest interior woody species were well established and dominant in transition zones and cut slopes. Potential native species for slope restoration can be identified by examining functional group species in the adjacent forest. These native species can achieve restoration goals and block invasive species in the same functional group. Festuca arundinacea (tall fescue), which is reported as an invasive alien species, rapidly spread after introduction for restoration. Thus, continuous monitoring for impact on native communities is required after sowing invasive alien species. Future slope restoration should consider native woody species and perennial forest sedge species that develop rhizomes, and reconsider the use of tall fescue. This study indicates that cut slopes can be appropriately managed to enhance the quality of habitats for native species.N

Identifying high-priority conservation areas for endangered waterbirds using a flagship species in the Korean DMZ

The Hangang River and Imjingang River estuaries in Korea are part of the main transit route for many migratory birds that use the East Asia-Pacific flyway. Despite the global importance of this area as a seasonal bird stopover site and resting area, conservation areas have not been established in this area based on ecological properties. This study aimed to examine the umbrella effect of the white-naped crane (Antigone vipio), which is one of the best-known flagship species in East Asia, and to determine the effectiveness of establishing a conservation plan in the western DMZ based on the distribution of white-naped cranes. Species distribution modeling was performed for the white-naped crane; other threatened waterbirds wintering in the western DMZ; Group 1, including species with ecological traits similar to those of the white-naped crane; and Group 2, including species with ecological traits different from those of the white-naped crane. The modeling was based on field survey data from a citizen science project, and a systematic conservation planning approach was adopted for each species group. The results showed no significant differences between the plan for the target species and the plans for the other species groups, indicating that protecting white-naped cranes habitat can also protect the habitat of other threatened waterbirds.N

Long-Term Land Cover Changes in the Western Part of the Korean Demilitarized Zone

After the Korean War, human access to the Korean Demilitarized Zone (DMZ) was highly restricted. However, limited agricultural activity was allowed in the Civilian Control Zone (CCZ) surrounding the DMZ. In this study, land cover and vegetation changes in the western DMZ and CCZ from 1919 to 2017 were investigated. Coniferous forests were nearly completely destroyed during the war and were then converted to deciduous forests by ecological succession. Plains in the DMZ and CCZ areas showed different patterns of land cover changes. In the DMZ, pre-war rice paddies were gradually transformed into grasslands. These grasslands have not returned to forest, and this may be explained by wildfires set for military purposes or hydrological fluctuations in floodplains. Grasslands near the floodplains in the DMZ are highly valued for conservation as a rare land type. Most grasslands in the CCZ were converted back to rice paddies, consistent with their previous use. After the 1990s, ginseng cultivation in the CCZ increased. In addition, the landscape changes in the Korean DMZ and CCZ were affected by political circumstances between South and North Korea. Our results provide baseline information for the development of ecosystem management and conservation plans for the Korean DMZ and CCZ. Given the high biodiversity and ecological integrity of the Korean DMZ region, transboundary governance for conservation should be designed.Y

Identification of restoration species for early roadcut slope regeneration using functional group approach

Current restoration protocols for roadside cut slopes in South Korea involve hydroseeding with exotic species to achieve early greening and soil stabilization. However, exotic species can negatively affect adjacent native ecosystems. This study investigated the functional traits of early colonizers in slope restoration and surrounding environments to inform restoration methods that generate similar communities as those of native ecosystems. Slope vegetation (species density, species cover, upperstory species, canopy cover) and environment (aspect, angle, soil properties) were surveyed from the road edge to the forest boundary, and were classified as three distinct zones: a hydroseeded slope, a transition zone, and the forest edge. Naturally occurring species were classified into functional groups to examine dominant traits during early colonization. Hemicryptophyte or geophyte forest species and forest interior woody species were well established and dominant in transition zones and cut slopes. Potential native species for slope restoration can be identified by examining functional group species in the adjacent forest. These native species can achieve restoration goals and block invasive species in the same functional group. Festuca arundinacea (tall fescue), which is reported as an invasive alien species, rapidly spread after introduction for restoration. Thus, continuous monitoring for impact on native communities is required after sowing invasive alien species. Future slope restoration should consider native woody species and perennial forest sedge species that develop rhizomes, and reconsider the use of tall fescue. This study indicates that cut slopes can be appropriately managed to enhance the quality of habitats for native species.N

Characterization of the Secretome of a Specific Cell Expressing Mutant Methionyl-tRNA Synthetase in Co-Culture Using Click Chemistry

Co-culture system, in which two or more distinct cell types are cultured together, is advantageous in that it can mimic the environment of the in vivo niche of the cells. In this study, we presented a strategy to analyze the secretome of a specific cell type under the co-culture condition in serum-supplemented media. For the cell-specific secretome analysis, we expressed the mouse mutant methionyl-tRNA synthetase for the incorporation of the non-canonical amino acid, azidonorleucine into the newly synthesized proteins in cells of which the secretome is targeted. The azidonorleucine-tagged secretome could be enriched, based on click chemistry, and distinguished from any other contaminating proteins, either from the cell culture media or the other cells co-cultured with the cells of interest. In order to have more reliable true-positive identifications of cell-specific secretory bodies, we established criteria to exclude any identified human peptide matched to bovine proteins. As a result, we identified a maximum of 719 secreted proteins in the secretome analysis under this co-culture condition. Last, we applied this platform to profile the secretome of mesenchymal stem cells and predicted its therapeutic potential on osteoarthritis based on secretome analysis

iNrich, Rapid and Robust Method to Enrich N-Terminal Proteome in a Highly Multiplexed Platform

The field of terminal proteomics is limited in that it is optimized for large-scale analysis via multistep processes involving liquid chromatography. Here, we present an integrated N-terminal peptide enrichment method (iNrich) that can handle as little as 25 mu g of cell lysate via a single-stage encapsulated solid-phase extraction column. iNrich enables simple, rapid, and reproducible sample processing, treatment of a wide range of protein amounts (25 mu g similar to 1 mg), multiplexed parallel sample preparation, and in-stage sample prefractionation using a mixed-anion-exchange filter. We identified similar to 5000 N-terminal peptides (Nt-peptides) from only 100 mu g of human cell lysate including Nt-formyl peptides. Multiplexed sample preparation facilitated quantitative and robust enrichment of N-terminome iNrich with dozens of samples simultaneously. We further developed the method to incorporate isobaric tags such as a tandem mass tag (TMT) and used it to discover novel peptides during ER stress analysis. The iNrich facilitated high-throughput N-terminomics and degradomics at a low cost using commercially available reagents and apparatus, without requiring arduous procedures.11Nsciescopu

Common Repository of FBS Proteins (cRFP) to Be Added to a Search Database for Mass Spectrometric Analysis of Cell Secretome

We propose to use cRFP (common Repository of FBS Proteins) in the MS (mass spectrometry) raw data search of cell secretomes. cRFP is a small supplementary sequence list of highly abundant fetal bovine serum proteins added to the reference database in use. The aim behind using cRFP is to prevent the contaminant FBS proteins from being misidentified as other proteins in the reference database, just as we would use cRAP (common Repository of Adventitious Proteins) to prevent contaminant proteins present either by accident or through unavoidable contacts from being misidentified as other proteins. We expect it to be widely used in experiments where the proteins are obtained from serum-free media after thorough washing of the cells, or from a complex media such as SILAC, or from extracellular vesicles directly. Copyright © 2019 American Chemical Society.1