Meniscal ossicles as micro-CT imaging biomarker in a rodent model of antigen-induced arthritis: A synchrotron-based x-ray pilot study

It is increasingly recognized that early detection of bone erosion plays an important role in the overall evaluation of rheumatoid arthritis and in the choice of the correct treatment approach. Since an appropriate use of imaging biomarkers in preclinical settings offers the prospect of smaller and optimized sample size, in the present study we define an anatomical imaging biomarker that could be objectively measured from micro-CT imaging data as an indicator of bone erosion in arthritis process. The well-characterized antigen-induced arthritis (AIA) model in rats was used. The animals were divided into 2 groups: arthritic disease control and arthritic having been administrated with the tumor necrosis factor alpha-blocking agent (Humira). Rats were sacrificed in the acute phase of AIA; peripheral blood and synovial tissue were collected for assessment of arthritis. Ex vivo micro-CT tomography of knee joints was performed at the Elettra synchrotron light source (Trieste, Italy). Overall, results from this study suggest that use of high-resolution micro-CT analysis coupled with meniscal ossicles bone parameters quantification provide a powerful combination to enhance data interpretation and assessment of disease-modifying drugs in an animal model of arthritis

Enhanced and Flexible Software Tools for X-ray Computed Tomography at the Italian Synchrotron Radiation Facility Elettra

X-ray computed tomography (CT) experiments performed at synchrotron radiation facilities require adequate computing and storage resources due to the large amount of acquired and reconstructed data produced. To satisfy the heterogeneous needs of beamline users, flexible solutions are also required. Moreover, the growing demand of quantitative image analysis impose an easy integration between the CT reconstruction process and the subsequent feature extraction step. This paper presents some of the software solutions adopted by the SYRMEP beamline of the Italian synchrotron radiation facility Elettra. By using the enhanced version of the reconstruction software here presented as well as data reduction and data analysis tools, beamline users can easily implement an integrated and comprehensive approach to the digital image processing and image analysis required by a tomography-oriented scientific workflow

X-ray microtomography observations of xylem embolism in stems of Laurus nobilis are consistent with hydraulic measurements of percentage loss of conductance

Drought-induced xylem embolism is a serious threat to plant survival under future climate scenarios. Hence, accurate quantification of species-specific vulnerability to xylem embolism is a key to predict the impact of climate change on vegetation. Low-cost hydraulic measurements of embolism rate have been suggested to be prone to artefacts, thus requiring validation by direct visualization of the functional status of xylem conduits using nondestructive imaging techniques, such as X-ray microtomography (microCT). We measured the percentage loss of conductance (PLC) of excised stems of Laurus nobilis (laurel) dehydrated to different xylem pressures, and compared results with direct observation of gas-filled vs water-filled conduits at a synchrotron-based microCT facility using a phase contrast imaging modality. Theoretical PLC calculated on the basis of microCT observations in stems of laurel dehydrated to different xylem pressures overall were in agreement with hydraulic measurements, revealing that this species suffers a 50% loss of xylem hydraulic conductance at xylem pressures averaging 3.5 MPa. Our data support the validity of estimates of xylem vulnerability to embolism based on classical hydraulic techniques. We discuss possible causes of discrepancies between data gathered in this study and those of recent independent reports on laurel hydraulics

Clinical application of low-dose phase contrast breast CT: methods for the optimization of the reconstruction workflow

Results are presented of a feasibility study of three-dimensional X-ray tomographic mammography utilising in-line phase contrast. Experiments were performed at SYRMEP beamline of Elettra synchrotron. A specially designed plastic phantom and a mastectomy sample containing a malignant lesion were used to study the reconstructed image quality as a function of different image processing operations. Detailed evaluation and optimization of image reconstruction workflows have been carried out using combinations of several advanced computed tomography algorithms with different pre-processing and post-processing steps. Special attention was paid to the effect of phase retrieval on the diagnostic value of the reconstructed images. A number of objective image quality indices have been applied for quantitative evaluation of the results, and these were compared with subjective assessments of the same images by three experienced radiologists and one pathologist. The outcomes of this study provide practical guidelines for the optimization of image processing workflows in synchrotron-based phase-contrast mammo-tomography

Optimization of propagation-based x-ray phase-contrast tomography for breast cancer imaging

The aim of this study was to optimise the experimental protocol and data analysis for in-vivo breast cancer X-ray imaging. Results are presented of the experiment at the SYRMEP beamline of Elettra Synchrotron using the propagation-based phase-contrast mammographic tomography method, which incorporates not only absorption, but also X-ray phase information. In this study the images of breast tissue samples, of a size corresponding to a full human breast, with radiologically acceptable X-ray doses were obtained, and the degree of improvement of the image quality (from the diagnostic point of view) achievable using propagation-based phase-contrast image acquisition protocols with proper incorporation of X-ray phase retrieval into the reconstruction pipeline was investigated. Parameters such as the X-ray energy, sample-to-detector distance and data processing methods were tested, evaluated and optimized with respect to the estimated diagnostic value using a mastectomy sample with a malignant lesion. The results of quantitative evaluation of images were obtained by means of radiological assessment carried out by 13 experienced specialists. A comparative analysis was performed between the X-ray and the histological images of the specimen. The results of the analysis indicate that, within the investigated range of parameters, both the objective image quality characteristics and the subjective radiological scores of propagation-based phase-contrast images of breast tissues monotonically increase with the strength of phase contrast which in turn is directly proportional to the product of the radiation wavelength and the sample-to-detector distance. The outcomes of this study serve to define the practical imaging conditions and the CT reconstruction procedures appropriate for low-dose phase-contrast mammographic imaging of live patients at specially designed synchrotron beamlines

Phase contrast Breast tomography with synchrotron radiation: study and optimisation of experimental and reconstruction parameters.

Breast cancer is one of the most frequently diagnosed cancer types among women and it is the second leading cause of cancer related death. Therefore, breast cancer has become a critical public health concern and its detection at an early stage is crucial. For this reason, to improve the effectiveness of breast cancer screening, there is an increasing interest in the development of novel tools and imaging techniques that may supplement or replace mammography which is known for its limited specificity. In this context, in recent years, the development of x-ray phase-contrast imaging techniques, which exploit x-rays refraction in the body, have shown promising results for refining breast cancer diagnosis. It has been demonstrated that for x-rays passing through soft tissues, phase variations can be two to three orders of magnitude larger than absorption, and therefore an increased image contrast can be achieved with phase sensitive techniques. In addition, phase-contrast techniques hold the potential to reduce the radiation dose delivered to the patient. Several approaches for phase-contrast CT techniques have been studied, however, in this work, the focus is on propagation-based phase-contrast CT (PB-CT) as it does not re quire additional optical elements which makes it very dose efficient and easy to implement. Up to now the required level of spatial coherence of the incident x-ray beam used in PB-CT has practically limited its application to synchrotron facilities, however, the optimisation scheme for PB-CT breast imaging presented here can be generalised to novel generator-based phase-contrast imaging setups (including analyser-based imaging, edge-illumination, and grating-based imaging) or compact sources. The aim of this thesis work was to optimise the experimental protocol and data analysis for in-vivo three-dimensional phase-contrast breast imaging. Results are presented of feasibility studies carried out at Elettra and Australian Synchrotron using the propagation-based phase-contrast tomography method. Several breast tissue samples, of a size corresponding to a full human breast, and a custom designed plastic phantom have been studied at different resolution scales and experimental conditions. Several computed tomography reconstruction algorithms with different pre-processing and post-processing steps have been considered. Special attention was paid to the effect of phase retrieval on the diagnostic value of the reconstructed images. The images were quantitatively evaluated using objective quality indices and subjective assessments performed by experienced radiologists and pathologists. The results of the analysis indicate that, within the investigated range of parameters, both the objective image quality characteristics and the subjective radiological scores of propagation-based phase-contrast images of breast tissues monotonically increase with the strength of phase contrast which in turn is directly proportional to the product of the radiation wavelength and the sample-to-detector distance. In addition, the application of phase retrieval processing together with use of iterative reconstruction algorithms is fundamental to increase the intrinsic quality of the reconstructed CT images. The outcomes of this study serve to define the practical imaging conditions and the CT reconstruction procedures appropriate for low-dose phase-contrast breast imaging of live patients at specially designed synchrotron beamlines