A critically endangered Proteaceae in the Cape florisitic region threatened by an invasive pathogen

BACKGROUND : Sorocephalus imbricatus (Thunb.) R.Br. is a range-restricted species endemic to the Cape Floristic Region (CFR), South Africa. It is currently classified as Critically Endangered in accordance with the IUCN criteria. Like many other species endemic to the CFR, S. imbricatus is subjected to several major threats including habitat loss, habitat degradation and the impacts of invasive alien species. Sorocephalus imbricatus was recently identified as a species requiring improved representation in ex-situ collections. During field work undertaken to collect germplasm for this purpose, a concerning number of dead and dying plants were observed. OBJECTIVES : To determine the cause of rapid death of individuals in a remnant subpopulation of S. imbricatus. METHOD : A field visit to a subpopulation of the only extant population, Elands-kloof, was conducted to examine the symptoms associated with S. imbricatus mortality, and to collect samples for isolation and identification of putative pathogens. RESULTS : Dead and dying plants showed clear symptoms of root and collar rot, with Phytophthora cinnamomi Rands recovered from all samples. The collections highlighted the severe impact of P. cinnamomi on S. imbricatus, with the size of the subpopulation being reduced from 62 to 37 individuals (a 40% reduction) between October 2021 and May 2022. CONCLUSION : This study describes, for the first time, rapid mortality of the Critically Endangered Proteaceae species, S. imbricatus, likely caused by the invasive pathogen P. cinnamomi. This concerning discovery highlights the urgent need for greater recognition of the threat P. cinnamomi poses not only to S. imbricatus, but to the broader floristic diversity of the CFR. Importantly, it illustrates a need for a substantial body of work to be undertaken to address a significant lack of knowledge regarding the relative threat that P. cinnamomi poses to species of the CFR.The South African National Biodiversity Institute and the University of Pretoria.http://abcjournal.orgam2024BiochemistryGeneticsMicrobiology and Plant PathologySDG-15:Life on lan

Urban trees : bridge-heads for forest pest invasions and sentinels for early detection

Urban trees have been increasingly appreciated for the many benefits they provide. As concentrated hubs of human-mediated movement, the urban landscape is, however, often the first point of contact for exotic pests including insects and plant pathogens. Consequently, urban trees can be important for accidentally introduced forest pests to become established and potentially invasive. Reductions in biodiversity and the potential for stressful conditions arising from anthropogenic disturbances can predispose these trees to pest attack, further increasing the likelihood of exotic forest pests becoming established and increasing in density. Once established in urban environments, dispersal of introduced pests can proceed to natural forest landscapes or planted forests. In addition to permanent long-term damage to natural ecosystems, the consequences of these invasions include costly attempts at eradication and post establishment management strategies. We discuss a range of ecological, economic and social impacts arising from these incursions and the importance of global biosecurity is highlighted as a crucially important barrier to pest invasions. Finally, we suggest that urban trees may be viewed as ‘sentinel plantings’. In particular, botanical gardens and arboreta frequently house large collections of exotic plantings, providing a unique opportunity to help predict and prevent the invasion of new pests, and where introduced pests with the capacity to cause serious impacts in forest environments could potentially be detected during the initial stages of establishment. Such early detection offers the only realistic prospect of eradication, thereby reducing damaging ecological impacts and long term management costs.This paper had its origins at a workshop on ‘Non-native species in urban environments’ hosted by the DST-NRF Centre of Excellence for Invasion Biology (CIB) in Stellenbosch, South Africa, in November 2016.The South African National Department of Environmental Affairshttp://link.springer.com/journal/105302018-12-16hj2018Forestry and Agricultural Biotechnology Institute (FABI)Microbiology and Plant Patholog

Detection of Fusarium euwallaceae and its vector Euwallacea fornicatus on pear (Pyrus communis) and in deciduous fruit orchards in South Africa

We present the first report of Fusarium euwallaceae and its ambrosia beetle vector Euwallacea fornicatus in deciduous fruit tree orchards in South Africa. Fusarium euwallaceae, is shown to be pathogenic to pear (Pyrus communis) and the beetle can establish viable colonies in this host.Hortgro. Open access funding provided by Stellenbosch University.https://link.springer.com/journal/13314hj2024BiochemistryForestry and Agricultural Biotechnology Institute (FABI)GeneticsMicrobiology and Plant PathologyNon

Lessons from a major pest invasion : the polyphagous shot hole borer in South Africa

CITATION: Paap, T. et al. 2020. Lessons from a major pest invasion : the polyphagous shot hole borer in South Africa. South African Journal of Science, 116(11/12):8757, doi:10.17159/sajs.2020/8757.The original publication is available at https://sajs.co.zaThe arrival and establishment of invasive forest pests can cause devastating environmental damage and great economic impact. For example, the cost over the past decade of dealing with the arrival of a single invasive beetle in the USA, the emerald ash borer (Agrilus planipennis), is estimated at more than USD10 billion.1 Originating from Asia, this beetle has killed hundreds of millions of native ash trees since it became established in the USA. However, this beetle is but one of hundreds of invasive insect pests that impact forests in the USA, and that contribute to a global tree health crisis caused by invasive insects and pathogenic microorganisms.2-4 South Africa is no different from other countries and is experiencing an increasing rate of introductions of damaging forest pests.5,6 These invasions are largely unintentional and are a by-product of globalisation and increasing global trade.7,8 The movement of living plants and plant products, including untreated wood packaging materials (i.e. pallets, dunnage and crating), is known to be a major pathway for these pests.9,10 For clarification, in this commentary we use the terms ‘insect’ and ‘pathogen’ to distinguish between the two types of organisms, although we also use the general term ‘pest’ to refer to both groups. The term ‘invasive pest’ is used for introduced species that, in addition to maintaining a self-sustaining population, show evidence of spread and impact.https://sajs.co.za/article/view/8757Publisher's versio

A diverse range of Phytophthora species from botanical gardens in South Africa, including the novel Clade 5 species, Phytophthora mammiformis sp. nov.

SUPPLEMENTARY MATERIAL : FIG. S1: Maximum likelihood phylogeny using the single gene (ITS, βtub, cox1 and hsp90) datasets for ITS Clade 5 Phytophthora species. The clades of Phytophthora mammiformis are highlighted with a coloured block. Phytophthora podocarpi NZFS 3642 was used as an outgroup. Numbers on the branches are bootstrap support values values (n = 1 000, only ≥ 70 % displayed)/posterior probabilities (only ≥ 0.8). Superscript T denotes material with a type status. TABLE S1. GenBank accession numbers of Phytophthora isolates obtained from two botanical gardens in the KwaZulu-Natal Province of South Africa and status in South Africa.The genus Phytophthora contains many destructive and globally important plant pathogens. In the last decade, targeted sampling efforts have resulted in a dramatic increase in the number of known species, as well as a better understanding of their global distribution. Routine activities undertaken in botanical gardens, combined with great numbers of local and international visitors, place botanical gardens at risk to the accidental introduction and establishment of pathogens such as Phytophthora spp. In this study, the occurrence of Phytophthora was investigated in two botanical gardens in the KwaZulu- Natal Province of South Africa. Symptomatic collar and stem tissues were collected, and root and rhizosphere soil samples were taken from trees exhibiting symptoms of decline. Standard baiting techniques and direct plating of symptomatic tissues revealed the presence of seven species of Phytophthora residing in four phylogenetic clades. Five of these species, P. cinnamomi, P. citrophthora, P. multivora, P. parvispora and the informally designated taxon Phytophthora sp. stellaris were known to be present in South Africa and P. aquimorbida was recorded for the first time. Of these, P. citrophthora represented a novel host-pathogen association causing bleeding cankers on indigenous Celtis africana. A multilocus phylogenetic analysis based on ITS, βtub, cox1 and hsp90 sequences showed the presence of an undescribed species belonging to the Phytophthora ITS Clade 5. This species is described here as Phytophthora mammiformis sp. nov. This study highlights the importance of monitoring botanical gardens for the detection and discovery of pathogens and emphasises their value as sites for the discovery of novel host-pathogen associations.The South African Department of Forestry, Fisheries and the Environment (DFFE), the University of Pretoria, members of the Tree Protection Cooperative Programme (TPCP) and the DSI/NRF Centre of Excellence in Plant Health Biotechnology (CPHB).https://fuse-journal.orghj2024BiochemistryForestry and Agricultural Biotechnology Institute (FABI)GeneticsMicrobiology and Plant PathologyZoology and EntomologySDG-15:Life on lan

Anthropogenic disturbance impacts mycorrhizal communities and abiotic soil properties : implications for an endemic forest disease

In forest ecosystems, habitat fragmentation negatively impacts stand structure and biodiversity; the resulting fragmented patches of forest have distinct, disturbed edge habitats that experience different environmental conditions than the interiors of the fragments. In southwest Western Australia, there is a large-scale decline of the keystone tree species Corymbia calophylla following fragmentation and land use change. These changes have altered stand structure and increased their susceptibility to an endemic fungal pathogen, Quambalaria coyrecup, which causes chronic canker disease especially along disturbed forest habitats. However, the impacts of fragmentation on belowground processes in this system are not well-understood.We examined the effects of fragmentation on abiotic soil properties and ectomycorrhizal (ECM) and arbuscular mycorrhizal (AM) fungal communities, and whether these belowground changes were drivers of disease incidence. We collected soil from 17 sites across the distribution range of C. calophylla. Soils were collected across a gradient from disturbed, diseased areas to undisturbed, disease-free areas.We analysed soil nutrients and grew C. calophylla plants as a bioassay host. Plants were harvested and roots collected after 6 months of growth. DNA was extracted fromthe roots, amplified using fungal specific primers and sequenced using Illumina MiSeq. Concentrations of key soil nutrients such as nitrogen, phosphorus and potassium were much higher along the disturbed, diseased edges in comparison to undisturbed areas. Disturbance altered the community composition of ECM and AM fungi; however, only ECM fungal communities had lower rarefied richness and diversity along the disturbed, diseased areas compared to undisturbed areas. Accounting for effects of disturbance, ECM fungal diversity and leaf litter depth were highly correlated with increased disease incidence in C. calophylla. In the face of global change, increased virulence of an endemic pathogen has emerged in this Mediterranean-type forest.The Holsworth Wildlife Research Endowment, the Australasian Mycological Society and the Australian Research Council Linkage LP120200581.https://www.frontiersin.org/journals/forests-and-global-change#am2022BiochemistryForestry and Agricultural Biotechnology Institute (FABI)GeneticsMicrobiology and Plant Patholog

Anthropogenic disturbance impacts stand structure and susceptibility of an iconic tree species to an endemic canker pathogen

Forest ecosystems characterised by higher tree species diversity have been linked to a reduced susceptibility to pathogens. Conversely, endemic pathogens contribute to forest ecosystem dynamics and process. In the face of global change, however, negative impacts arising from more frequent and severe forest disturbances are increasingly observed. An increase in the susceptibility of Corymbia calophylla, a keystone tree species of southwest Western Australia, to cankers caused by the endemic fungus Quambalaria coyrecup, has emerged in recent decades. Landscape scale assessment of disease incidence has implicated the predisposing role of anthropogenic disturbance, indicating a need for this to be examined at a finer resolution. We assessed the effects of anthropogenic disturbance on the incidence of canker disease caused by Q. coyrecup across a disturbance gradient at 17 forest sites. In addition, we determined the impact of disturbance on tree community composition and stand level structural traits including stem density and stand basal area, and investigated the role of these factors as drivers of canker presence. Canker incidence and associated mortality of C. calophylla increased with anthropogenic disturbance. Disturbed edges showed significantly different overstorey composition from the forest transects. Total stem density increased with increasing disturbance, and disturbed edges contained greater numbers of C. calophylla stems compared to forest transects. There was a much increased basal area of C. calophylla on disturbed edges. Regardless of transect position, an increased incidence of canker resulted on sites with increased C. calophylla basal area. Lastly, increased tree species diversity (as measured by species richness) was associated with decreased canker incidence. We demonstrate that anthropogenic disturbance has altered stand structure and led to an increased susceptibility of C. calophylla to Q. coyrecup, resulting in high disease incidence and mortality of trees on disturbed road edges. Our results highlight the complexity of addressing tree health issues in the presence of multiple global change factors.The Australian Research Council (Linkage Project 120200581) and conducted within the Western Australian State Centre of Excellence for Climate Change Woodland and Forest Health, which is a partnership between private industry, community groups, universities and the Government of Western Australia.http://www.elsevier.com/locate/foreco2019-10-01hj2018Forestry and Agricultural Biotechnology Institute (FABI)Microbiology and Plant Patholog

Towards a best practice methodology for the detection of Phytophthora species in soils

The genus Phytophthora contains species that are major pathogens worldwide, affecting a multitude of plant species across agriculture, horticulture, forestry, and natural ecosystems. Here, we concentrate on those species that are dispersed through soil and water, attacking the roots of the plants, causing them to rot and die. The intention of this study was to compare the soil baiting protocol developed by the Centre for Phytophthora Science and Management (CPSM) with two other baiting methods used in Australia. The aim was to demonstrate the effectiveness of each protocol for soil baiting Phytophthora species in different substrates. Three experiments were conducted: the first to test the sensitivity of each method to detect Phytophthora cinnamomi, the second to test the effect of substrate type (sand or loam), and the third to test the detection of species (P. cinnamomi, P. multivora, or P. pseudocryptogea). The specificity of different plant species baits was compared within and between the methods. Substrate type influenced isolation in all methods; however, the CPSM method was superior regardless of substrate, albeit slower than one of the other methods for one substrate. Comparing bait species between the three methods, Quercus ilex was the most attractive bait for P. cinnamomi, particularly in the CPSM method. The choice of protocol affected the isolation associated with each bait type. Overall, the multiple bait system used by CPSM was shown to provide the most sensitive and reliable detection of Phytophthora species from soil samples.info:eu-repo/semantics/publishedVersio

Anthropogenic disturbances and the dmergence of native diseases : a threat to forest health

PURPOSE OF REVIEW : Human-caused global change is fundamentally altering natural forest ecosystems. More trees are exhibiting a wide range of symptoms indicative of poor vigour, particularly stressed species at the edge of their native ranges and stands growing on marginal sites. This review will focus on complex tree diseases (declines) caused by native pathogens and the key environmental drivers that contribute to this phenomenon. These systems are frequently complex, with multiple drivers at work. RECENT FINDINGS : Using four cases studies on different continents, we explored the direct and indirect environmental drivers underlying these decline syndromes. Although climate and weather events seem to be usually associated with forest decline, we found that environmental disturbance by either forest management or land-use changes is also a global predisposing factor of decline which deserves more attention. Changes in land use have directly benefited pathogens such as root rots in the Pyrenees (Spain) or indirectly by making the environment more conducive for canker and foliar diseases in Australia and the USA. Focus on land-use changes could improve understanding of current decline problems such as those affecting Araucaria in Chile. SUMMARY : The next century will almost certainly see an unprecedented rise in forest pathogen epidemics, requiring a proactive rather than reactive response. Diseases caused by native pathogens with complex aetiologies will become more common, and recognising, characterising and managing these epidemics are difficult because native pathogens are frequently already widespread, and eradication is not feasible. We need to start approaching these issues from a ‘whole ecosystem’ perspective, highlighting the many aspects and entanglements of forest declines and allowing us to respond with management options tailored to each scenario. The approach proposed here provides logical steps based on six questions to untangle the direct and indirect environmental drivers of tree declines.Open Access funding enabled and organized by CAUL and its Member Institutions. The ‘Ramón y Cajal’ fellowship RYC-2015–17459 from the Ministry of Science and Education of Spain and USDA Forest Service Forest Health Protection.https://link.springer.com/journal/40725hj2023BiochemistryForestry and Agricultural Biotechnology Institute (FABI)GeneticsMicrobiology and Plant PathologyPlant Production and Soil Scienc