VegMachine.net. online land cover analysis for the Australian rangelands

This paper documents the development and use of the VegMachine.net land cover monitoring tool. From 2002 to 2015, VegMachine® software was used by government agencies, natural resource management (NRM) groups and individual pastoralists in northern Australia to assess and benchmark vegetation cover levels. In 2016 the VegMachine.net website was launched to build a wider user base and assure service continuity. Users can now graph historical (1990-) cover on one or more user defined areas of interest (AOI), produce comprehensive paddock-by-paddock property monitoring reports, and view a range of land cover raster images through the website map panel. In its first 32 months of operation 913 users logged 1604 sessions on the website and more than 1000 of the website's most comprehensive monitoring reports were distributed to users. Levels of use varied 26% of users (n = 237) have used the website more than once, and within this group a smaller set of regular users (n = 36) have used the site more than five times, in many cases to provide analyses to multiple clients. We outline four case studies that document the significant impact VegMachine.net has had on users including graziers, government agencies, NRM groups and researchers. We also discuss some possible paths forward that could widen the user base and improve retention of first time users. © 2019 The State of Queensland (through the Department of Agriculture and Fisheries) 2019 Open Access

VegMachine.net. Online land cover analysis for the rangelands

VegMachine.net is an online land cover monitoring tool unded by the Fitzroy Basin Association (FBA). The tool focuses primarily on Queensland, but has functionality for much of Australia’s rangelands. The website went live in July 2016 and recently logged the 1000th user session. Users can view seven different seasonal time series of cover products across the landscape and interactively interrogate and graph ground cover change in six different on-the-fly and email delivered reports. Results can then be exported for use in other software. To date, users have generated over 400 VegMachine® FORAGE ground cover reports which provide paddock-by-paddock, landtype-by-landtype analysis of ground cover change from 1990 to the present. Detailed help is available in multiple formats, including website popups and a dedicated YouTube channel. The web application was designed for two main user groups; technically equipped RD&E personnel including those servicing land manager clients, and a subset of the grazier community willing to operate the service themselves. Initial rollout of the application focused primarily on training events for government agency, private consultancy and natural resource management (NRM) staff in regional Queensland. These users form the core of the current user base. In this paper, we outline the development of VegMachine.net. We demonstrate the primary functionality of the website, provide an overview of user experience including a case study and discuss major learnings and future directions

The role of integrated information acquisition and management in the analysis of coastal ecosystem change

This book chapter represents a synthesis of the work which started in my PhD and which has been the conceptual basis for all of my research since 1993. The chapter presents a method for scientists and managers to use for selecting the type of remotely sensed data to use to meet their information needs associated with a mapping, monitoring or modelling application. The work draws on results from several of my ARC projects, CRC Rainforest and Coastal projects and theses of P.Scarth , K.Joyce and C.Roelfsema

Data Analysis with PLSR models

Land condition monitoring information is required for the strategic management of grazing land and for a better understanding of ecosystem processes. Yet, for policy makers and those land managers whose properties are situated within north-eastern Australia's vast Great Barrier Reef catchments, there has been a general lack of geospatial land condition monitoring information. This paper provides an overview of integrated land monitoring activity in rangeland areas of two major Reef catchments in Queensland: the Burdekin and Fitzroy regions. The project aims were to assemble land condition monitoring datasets that would assist grazing land management and support decision-makers investing public funds; and deliver these data to natural resource management(NRM) community groups, which had been given increased responsibility for delivering local environmental outcomes. We describe the rationale and processes used to produce new land condition monitoring datasets derived from remotely sensed Landsat thematic mapper (TM) and high resolution SPOT 5 satellite imagery and from rapid land condition ground assessment. Specific products include subcatchment groundcover change maps, regional mapping of indicative very poor land condition, and stratified land condition site summaries. Their application, integration, and limitations are discussed. The major innovation is a better understanding of NRM issues with respect to land condition across vast regional areas, and the effective transfer of decision-making capacity to the local level. Likewise, with an increased ability to address policy questions from an evidence-based position, combined with increased cooperation between community, industry and all levels of government, a new era has emerged for decision-makers in rangeland management

Global warming and mass extinctions associated with large igneous province volcanism

The coincidence of large igneous province (LIP) eruptions with at least three, if not all of the “Big Five” biotic crises of the Phanerozoic implies that volcanism is a key driver of mass extinctions. Many LIP-induced extinction scenarios invoke global warming, caused primarily (but not exclusively) by greenhouse gases emitted at the site of LIP emplacement and by contact metamorphism of carbon-rich host rocks. Here we explore a) the climate-changing products of volcanism including sulfur dioxide (SO2), carbon dioxide (CO2) and methane (CH4) from eruptions, contact metamorphism, and melting (dissociation) of gas hydrates; b) their deadly effects, including marine anoxia and thermal stress; c) increasingly sophisticated paleotemperature proxies (e.g. δ18O of shell material) through case studies of the best-known LIP-warming-extinction nexi; and d) global warming through the lens of the putative “Anthropocene” extinction

The intravenous pharmacokinetics of butorphanol and detomidine dosed in combination compared with individual dose administrations to exercised horses

In equine and racing practice, detomidine and butorphanol are commonly used in combination for their sedative properties. The aim of the study was to produce detection times to better inform European veterinary surgeons, so that both drugs can be used appropriately under regulatory rules. Three independent groups of 7, 8 and 6 horses, respectively, were given either a single intravenous administration of butorphanol (100 mu g/kg), a single intravenous administration of detomidine (10 mu g/kg) or a combination of both at 25 (butorphanol) and 10 (detomidine) mu g/kg. Plasma and urine concentrations of butorphanol, detomidine and 3-hydroxydetomidine at predetermined time points were measured by liquid chromatography-tandem mass spectrometry (LC-MS/MS). The intravenous pharmacokinetics of butorphanol dosed individually compared with co-administration with detomidine had approximately a twofold larger clearance (646 +/- 137 vs. 380 +/- 86 ml hr(-1) kg(-1)) but similar terminal half-life (5.21 +/- 1.56 vs. 5.43 +/- 0.44 hr). Pseudo-steady-state urine to plasma butorphanol concentration ratios were 730 and 560, respectively. The intravenous pharmacokinetics of detomidine dosed as a single administration compared with co-administration with butorphanol had similar clearance (3,278 +/- 1,412 vs. 2,519 +/- 630 ml hr(-1) kg(-1)) but a slightly shorter terminal half-life (0.57 +/- 0.06 vs. 0.70 +/- 0.11 hr). Pseudo-steady-state urine to plasma detomidine concentration ratios are 4 and 8, respectively. The 3-hydroxy metabolite of detomidine was detected for at least 35 hr in urine from both the single and co-administrations. Detection times of 72 and 48 hr are recommended for the control of butorphanol and detomidine, respectively, in horseracing and equestrian competitions

Copy Number Variation Affecting the Photoperiod-B1 and Vernalization-A1 Genes Is Associated with Altered Flowering Time in Wheat (Triticum aestivum)

The timing of flowering during the year is an important adaptive character affecting reproductive success in plants and is critical to crop yield. Flowering time has been extensively manipulated in crops such as wheat (Triticum aestivum L.) during domestication, and this enables them to grow productively in a wide range of environments. Several major genes controlling flowering time have been identified in wheat with mutant alleles having sequence changes such as insertions, deletions or point mutations. We investigated genetic variants in commercial varieties of wheat that regulate flowering by altering photoperiod response (Ppd-B1 alleles) or vernalization requirement (Vrn-A1 alleles) and for which no candidate mutation was found within the gene sequence. Genetic and genomic approaches showed that in both cases alleles conferring altered flowering time had an increased copy number of the gene and altered gene expression. Alleles with an increased copy number of Ppd-B1 confer an early flowering day neutral phenotype and have arisen independently at least twice. Plants with an increased copy number of Vrn-A1 have an increased requirement for vernalization so that longer periods of cold are required to potentiate flowering. The results suggest that copy number variation (CNV) plays a significant role in wheat adaptation

CT colonography: optimisation, diagnostic performance and patient acceptability of reduced-laxative regimens using barium-based faecal tagging

To establish the optimum barium-based reduced-laxative tagging regimen prior to CT colonography (CTC). Ninety-five subjects underwent reduced-laxative (13 g senna/18 g magnesium citrate) CTC prior to same-day colonoscopy and were randomised to one of four tagging regimens using 20 ml 40%w/v barium sulphate: regimen A: four doses, B: three doses, C: three doses plus 220 ml 2.1% barium sulphate, or D: three doses plus 15 ml diatriazoate megluamine. Patient experience was assessed immediately after CTC and 1 week later. Two radiologists graded residual stool (1: none/scattered to 4: >50% circumference) and tagging efficacy for stool (1: untagged to 5: 100% tagged) and fluid (1: untagged, 2: layered, 3: tagged), noting the HU of tagged fluid. Preparation was good (76–94% segments graded 1), although best for regimen D (P = 0.02). Across all regimens, stool tagging quality was high (mean 3.7–4.5) and not significantly different among regimens. The HU of layered tagged fluid was higher for regimens C/D than A/B (P = 0.002). Detection of cancer (n = 2), polyps ≥6 mm (n = 21), and ≤5 mm (n = 72) was 100, 81 and 32% respectively, with only four false positives ≥6 mm. Reduced preparation was tolerated better than full endoscopic preparation by 61%. Reduced-laxative CTC with three doses of 20 ml 40% barium sulphate is as effective as more complex regimens, retaining adequate diagnostic accuracy