Towards a multimedia remote viewer for mobile thin clients

Be there a traditional mobile user wanting to connect to a remote multimedia server. In order to allow them to enjoy the same user experience remotely (play, interact, edit, store and share capabilities) as in a traditional fixed LAN environment, several dead-locks are to be dealt with: (1) a heavy and heterogeneous content should be sent through a bandwidth constrained network; (2) the displayed content should be of good quality; (3) user interaction should be processed in real-time and (4) the complexity of the practical solution should not exceed the features of the mobile client in terms of CPU, memory and battery. The present paper takes this challenge and presents a fully operational MPEG-4 BiFS solution

Intraspecific competition hinders drought recovery in a resident but not in its range-expanding congener plant independent of mycorrhizal symbiosis

Background and aims Understanding biotic interactions within plant populations and with their symbiotic partners is crucial for elucidating plant responses to drought. While many studies have highlighted the importance of intraspecific plant or mutualistic fungal interactions in predicting drought responses, we know little about the combined effects of these two interactions on the recovery of plants after drought. Methods We conducted an experiment to study the recovery after an extreme drought event of a native European plant species (Centaurea jacea) and its range-expanding congener (Centaurea stoebe), across a gradient of plant density and in association with an AM fungal species (Rhizophagus irregularis). Results Our results showed strong intraspecific competition in C. jacea, which constrained their postdrought recovery. We further found that AM fungi constrained root biomass recovery of C. jacea after drought under high intraspecific competition. The post-drought recovery in C. stoebe was high potentially due to its greater plasticity in the root diameter under drought conditions. Conclusion Strong intraspecific competition can constrain recovery in plants like C. jacea with lesser root trait plasticity after drought, independent of mycorrhizal symbiosis

Thermal noise limit in the Virgo mirror suspension

Abstract The expected current limit to the Virgo sensitivity is presented. New materials to realize a low thermal noise suspension for the Virgo optics are investigated. A promising fused silica suspension for the Virgo mirrors is presented

How will climate change affect the feeding biology of Collembola?

Collembolans are one of the most diverse and abundant group of soil invertebrates. Recent studies have shown anthropogenic climate warming to alter Collembola diversity and density in warm-dry (more detrimental effects) and warm-wet (lesser detrimental effects) conditions. Besides the direct influence of abiotic stressors, shifts in food availability could help understand variable collembolan responses to climate warming. Collembolan diet is generally formed by two main groups of soil fungi: saprotrophic and mycorrhizal fungi, which occupy different spatial niches in the soil, and are simultaneously affected by climate warming and drought. These fungal responses to climate change alter food availability for Collembola, inducing shifts in their dietary composition. Collembolans preferentially consume saprotrophic fungi, regardless of their spatial niche. However, those inhabiting deeper soil layers occasionally feed on mycorrhizal fungi and rely more frequently on such diets when other food sources become scarce. We suggest that climate change-driven scarcity of saprotrophic fungal diets in soils would make collembolans depend more on mycorrhizal fungal diets. We then discuss how such dietary shifts are driven by distinct mechanisms in warm-dry and warm-wet soil conditions. We finally call for the use of emerging techniques (e.g., stable isotope analysis, molecular gut content) to quantify the diets of Collembola more accurately under different climate change scenarios, which will help us shed more insights on how warming and precipitation variability are going to alter Collembola-fungal trophic interactions in a changing world

Large-scale automated identification of mouse brain cells in confocal light sheet microscopy images

Motivation: Recently, confocal light sheet microscopy has enabled high-throughput acquisition of whole mouse brain 3D images at the micron scale resolution. This poses the unprecedented challenge of creating accurate digital maps of the whole set of cells in a brain. Results: We introduce a fast and scalable algorithm for fully automated cell identification. We obtained the whole digital map of Purkinje cells in mouse cerebellum consisting of a set of 3D cell center coordinates. The method is accurate and we estimated an F(1) measure of 0.96 using 56 representative volumes, totaling 1.09 GVoxel and containing 4138 manually annotated soma centers. Availability and implementation: Source code and its documentation are available at http://bcfind.dinfo.unifi.it/. The whole pipeline of methods is implemented in Python and makes use of Pylearn2 and modified parts of Scikit-learn. Brain images are available on request. Contact: [email protected] Supplementary information: Supplementary data are available at Bioinformatics online

Transcriptomic and chemogenomic analyses unveil the essential role of Com2-regulon in response and tolerance of Saccharomyces cerevisiae to stress induced by sulfur dioxide

During vinification Saccharomyces cerevisiae cells are frequently exposed to high concentrations of sulfur dioxide (SO2) that is used to avoid overgrowth of unwanted bacteria or fungi present in the must. Up to now the characterization of the molecular mechanisms by which S. cerevisiae responds and tolerates SO2 was focused on the role of the sulfite efflux pump Ssu1 and investigation on the involvement of other players has been scarce, especially at a genome-wide level. In this work, we uncovered the essential role of the poorly characterized transcription factor Com2 in tolerance and response of S. cerevisiae to stress induced by SO2 at the enologically relevant pH of 3.5. Transcriptomic analysis revealed that Com2 controls, directly or indirectly, the expression of more than 80% of the genes activated by SO2, a percentage much higher than the one that could be attributed to any other stress-responsive transcription factor. Large-scale phenotyping of the yeast haploid mutant collection led to the identification of 50 Com2-targets contributing to the protection against SO2 including all the genes that compose the sulfate reduction pathway (MET3, MET14, MET16, MET5, MET10) and the majority of the genes required for biosynthesis of lysine (LYS2, LYS21, LYS20, LYS14, LYS4, LYS5, LYS1 and LYS9) or arginine (ARG5,6, ARG4, ARG2, ARG3, ARG7, ARG8, ORT1 and CPA1). Other uncovered determinants of resistance to SO2 (not under the control of Com2) included genes required for function and assembly of the vacuolar proton pump and enzymes of the antioxidant defense, consistent with the observed cytosolic and mitochondrial accumulation of reactive oxygen species in SO2-stressed yeast cells.This work was funded by INNOVINE&WINE, Norte-01-0145-FEDER-000038, co-financed by the European Region-al Development Fund (ERDF) through Norte 2020 and by ERFD through POCI-COMPETE 2020. Support received by FCT-Portuguese Foundationfor Science and Technology(PTDC/EXPL/AGR-TEC/1823/2013 and PTDC/AGR-TEC/3315/2014) and by INTERACT project –“Integrated Research in Environment, Agro-Chain and Technology”, no. NORTE-01-0145-FEDER-000017, in its line of research enti-tled VitalityWine. Supportreceived by Biosystems and In-tegrative Sciences Institute (BioISI; FCT/UID/Multi/04046/2018) and iBB-Institute for Bioengi-neering and Biosciences (UID/BIO/04565/2019) by FCT and from Programa Operacional Regional de Lisboa 2020 (pro-ject no. 007317 and PTDC/AGR-TEC/3315/2014_LISBOA-01-0145-FEDER-016834) is also acknowledged.The authors thank Professor Isabel Sá-Correia for the help and guidance in conducting the chemogenomic analysi

AC Electric Fields Drive Steady Flows in Flames

We show that time-oscillating electric fields applied to plasmas present in flames create steady flows of gas. Ions generated within the flame move in the field and migrate a distance δ before recombining; the net flow of ions away from the flame creates a time-averaged force that drives the steady flows observed experimentally. A quantitative model describes the response of the flame and reveals how δ decreases as the frequency of the applied field increases. Interestingly, above a critical frequency, ac fields can be used to manipulate flames at a distance without the need for proximal electrodes.Chemistry and Chemical BiologyEngineering and Applied Science

High-fidelity imaging in brain-wide structural studies using light-sheet microscopy

Light-sheet microscopy (LSM) has proven a useful tool in neuroscience to image whole brains with high frame rates at cellular resolution and, in combination with tissue clearing methods, is often employed to reconstruct the cyto-architecture over the intact mouse brain. Inherently to LSM, however, residual opaque objects, always present to some extent even in extremely well optically cleared samples, cause stripe artifacts, which, in the best case, severely affect image homogeneity and, in the worst case, completely obscure features of interest. Here, demonstrating two example applications in intact optically cleared mouse brains, we report how Bessel beams reduce streaking artifacts and produce high-fidelity structural data for the brain-wide morphology of neuronal and vascular networks. We found that a third of the imaged volume of the brain was affected by strong striated image intensity inhomogeneity and, furthermore, a significant amount of information content lost with Gaussian illumination was accessible when interrogated with Bessel beams. In conclusion, Bessel beams produce high-fidelity structural data of improved image homogeneity and might significantly relax demands placed on the automated tools to count, trace, or segment fluorescent features of interest