Quarkonium spin structure in lattice NRQCD

Numerical simulations of the quarkonium spin splittings are done in the framework of lattice nonrelativistic quantum chromodynamics (NRQCD). At leading order in the velocity expansion the spin splittings are of $O(M_Q v^4)$, where $M_Q$ is the renormalized quark mass and $v^2$ is the mean squared quark velocity. A systematic analysis is done of all next-to-leading order corrections. This includes the addition of $O(M_Q v^6)$ relativistic interactions, and the removal of $O(a^2 M_Q v^4)$ discretization errors in the leading-order interactions. Simulations are done for both S- and P-wave mesons, with a variety of heavy quark actions and over a wide range of lattice spacings. Two prescriptions for the tadpole improvement of the action are also studied in detail: one using the measured value of the average plaquette, the other using the mean link measured in Landau gauge. Next-to-leading order interactions result in a very large reduction in the charmonium splittings, down by about 60% from their values at leading order. There are further indications that the velocity expansion may be poorly convergent for charmonium. Prelimary results show a small correction to the hyperfine splitting in the Upsilon system.Comment: 16 pages, REVTEX v3.1, 5 postscript figures include

Tadpole renormalization and relativistic corrections in lattice NRQCD

We make a comparison of two tadpole renormalization schemes in the context of the quarkonium hyperfine splittings in lattice NRQCD. Improved gauge-field and NRQCD actions are analyzed using the mean-link $u_{0,L}$ in Landau gauge, and using the fourth root of the average plaquette $u_{0,P}$. Simulations are done for $c\bar c$, $b\bar c$, and $b\bar b$ systems. The hyperfine splittings are computed both at leading and at next-to-leading order in the relativistic expansion. Results are obtained at lattice spacings in the range of about 0.14~fm to 0.38~fm. A number of features emerge, all of which favor tadpole renormalization using $u_{0,L}$. This includes much better scaling behavior of the hyperfine splittings in the three quarkonium systems when $u_{0,L}$ is used. We also find that relativistic corrections to the spin splittings are smaller when $u_{0,L}$ is used, particularly for the $c\bar c$ and $b\bar c$ systems. We also see signs of a breakdown in the NRQCD expansion when the bare quark mass falls below about one in lattice units. Simulations with $u_{0,L}$ also appear to be better behaved in this context: the bare quark masses turn out to be larger when $u_{0,L}$ is used, compared to when $u_{0,P}$ is used on lattices with comparable spacings. These results also demonstrate the need to go beyond tree-level tadpole improvement for precision simulations.Comment: 14 pages, 7 figures (minor changes to some phraseology and references

Modelling failure mechanisms of soft cliff profiles

A large proportion of the 11,000 km coastline of the United Kingdom is backed by soft cliffs. These cliffs are subject to frequent slumping and landslip events, particularly where sea and ground water percolates into the soil and rock. Many of these cliffs are formed from glaciogenic sediments, which experience severe erosion and rapid recession with long-term horizontal recession rates typically up to 2-3 m/year. A series of scaled physical model tests have been conducted using a large centrifuge facility with two-dimensional cliff models. These were tested in a wave flume container located on the centrifuge. Wave loading was created using a quasi-flap paddle system that was located at the opposite end of the centrifuge box. A number of tests were conducted using different cliff materials (i.e. combinations of sand and Portland cement). A parametric study was carried out to assess the influence of variations in cliff geometry and height, soil properties, wave amplitude and period. From these tests, it has been found that generally, failures occurred by progressive undercutting of the cliff toe, followed by global failure of the cliff mass

Predicting the outer membrane proteome of Pasteurella multocida based on consensus prediction enhanced by results integration and manual confirmation

Background Outer membrane proteins (OMPs) of Pasteurella multocida have various functions related to virulence and pathogenesis and represent important targets for vaccine development. Various bioinformatic algorithms can predict outer membrane localization and discriminate OMPs by structure or function. The designation of a confident prediction framework by integrating different predictors followed by consensus prediction, results integration and manual confirmation will improve the prediction of the outer membrane proteome. Results In the present study, we used 10 different predictors classified into three groups (subcellular localization, transmembrane β-barrel protein and lipoprotein predictors) to identify putative OMPs from two available P. multocida genomes: those of avian strain Pm70 and porcine non-toxigenic strain 3480. Predicted proteins in each group were filtered by optimized criteria for consensus prediction: at least two positive predictions for the subcellular localization predictors, three for the transmembrane β-barrel protein predictors and one for the lipoprotein predictors. The consensus predicted proteins were integrated from each group into a single list of proteins. We further incorporated a manual confirmation step including a public database search against PubMed and sequence analyses, e.g. sequence and structural homology, conserved motifs/domains, functional prediction, and protein-protein interactions to enhance the confidence of prediction. As a result, we were able to confidently predict 98 putative OMPs from the avian strain genome and 107 OMPs from the porcine strain genome with 83% overlap between the two genomes. Conclusions The bioinformatic framework developed in this study has increased the number of putative OMPs identified in P. multocida and allowed these OMPs to be identified with a higher degree of confidence. Our approach can be applied to investigate the outer membrane proteomes of other Gram-negative bacteria

The D234 action for light quarks

We investigate a new light fermion action (the ``D234'' action), which is accurate up to \O(a^3) and tadpole-improved \O(a \alpha_s) errors. Using D234 with Symanzik- and tadpole-improved glue we find evidence that continuum results for the quenched hadron spectrum (pion, rho and nucleon) can be obtained on coarse lattices.Comment: Latex, 4 pages, submitted to Lattice '95 proceeding

Thermospheric winds and temperatures above Mawson, Antarctica, observed with an all-sky imaging, Fabry-Perot spectrometer

A new all-sky imaging Fabry-Perot spectrometer has been installed at Mawson station (67°36' S, 62°52' E), Antarctica. This instrument is capable of recording independent spectra from many tens of locations across the sky simultaneously. Useful operation began in March 2007, with spectra recorded on a total of 186 nights. Initial analysis has focused on the large-scale daily and average behavior of winds and temperatures derived from observations of the 630.0 nm airglow line of atomic oxygen, originating from a broad layer centered around 240 km altitude, in the ionospheric F-region. <br><br> The 1993 Horizontal Wind Model (HWM93), NRLMSISE-00 atmospheric model, and the Coupled Thermosphere/Ionosphere Plasmasphere (CTIP) model were used for comparison. During the geomagnetically quiet period studied, observed winds and temperatures were generally well modelled, although temperatures were consistently higher than NRLMSISE-00 predicted, by up to 100 K. CTIP temperatures better matched our data, particularly later in the night, but predicted zonal winds which were offset from those observed by 70–180 ms<sup>−1</sup> westward. During periods of increased activity both winds and temperatures showed much greater variability over time-scales of less than an hour. For the active night presented here, a period of 45 min saw wind speeds decrease by around 180 ms<sup>−1</sup>, and temperatures increase by approximately 100 K. Active-period winds were poorly modelled by HWM93 and CTIP, although observed median temperatures were in better agreement with NRLMSISE-00 during such periods. <br><br> Average behavior was found to be generally consistent with previous studies of thermospheric winds above Mawson. The collected data set was representative of quiet geomagnetic and solar conditions. Geographic eastward winds in the afternoon/evening generally continued until around local midnight, when winds turned equatorward. Geographic meridional and zonal winds in the afternoon were approximately 50 ms<sup>−1</sup> weaker than expected from HWM93, as was the transition to equatorward flow around midnight. There was also a negligible geographic zonal component to the post-midnight wind where HWM93 predicted strong westward flow. Average temperatures between 19:00 and 04:00 local solar time were around 60 K higher than predicted by NRLMSISE-00

Precision Charmonium Spectroscopy From Lattice QCD

We present results for Charmonium spectroscopy using Non-Relativistic QCD (NRQCD). For the NRQCD action the leading order spin-dependent and next to leading order spin-independent interactions have been included with tadpole-improved coefficients. We use multi-exponential fits to multiple correlation functions to extract ground and excited $S$ states. Splittings between the lowest $S$, $P$ and $D$ states are given and we have accurate values for the $S$ state hyperfine splitting and the $\chi_c$ fine structure. Agreement with experiment is good - the remaining systematic errors are discussed.Comment: 23 pages uuencoded latex file. Contains figures in late

Identifying the transporters of different flavonoids in plants

We recently identified a new component of flavonoid transport pathways in Arabidopsis. The MATE protein FFT (Flower Flavonoid Transporter) is primarily found in guard cells and seedling roots, and mutation of the transporter results in floral and growth phenotypes. The nature of FFT’s substrate requires further exploration but our data suggest that it is a kaempferol diglucoside. Here we discuss potential partner H+-ATPases and possible redundancy among the close homologues within the large Arabidopsis MATE family