Transparent dynamic instrumentation

Process virtualization provides a virtual execution environment within which an unmodified application can be monitored and controlled while it executes. The provided layer of control can be used for purposes ranging from sandboxing to compatibility to profiling. The additional operations required for this layer are performed clandestinely alongside regular program execution. Software dynamic instrumentation is one method for implementing process virtualization which dynamically instruments an application such that the application's code and the inserted code are interleaved together. DynamoRIO is a process virtualization system implemented using software code cache techniques that allows users to build customized dynamic instrumentation tools. There are many challenges to building such a runtime system. One major obstacle is transparency. In order to support executing arbitrary applications, DynamoRIO must be fully transparent so that an application cannot distinguish between running inside the virtual environment and native execution. In addition, any desired extra operations for a particular tool must avoid interfering with the behavior of the application. Transparency has historically been provided on an ad-hoc basis, as a reaction to observed problems in target applications. This paper identifies a necessary set of transparency requirements for running mainstream Windows and Linux applications. We discuss possible solutions to each transparency issue, evaluate tradeoffs between different choices, and identify cases where maintaining transparency is not practically solvable. We believe this will provide a guideline for better design and implementation of transparent dynamic instrumentation, as well as other similar process virtualization systems using software code caches

Balance-of-force selective accumulation of trace ionic species in hierarchical sub-nano-/nano-/micro-porous structures

Separation of species of close electrochemical mobilities (peptides, isotopes) is of interest for a number of applications. In this presentation, we will explore selective accumulation of ionic species in current-polarized hierarchical sub-nano-/nano-/micro-porous structures. Please click Additional Files below to see the full abstract

A detailed study of the photo-injection annealing of thermally diffused InP solar cells

A detailed analysis of the annealing of thermally diffused InP solar cells fabricated by the Nippon Mining Co. is presented. The cells were irradiated with 1 MeV electrons, and the induced degradation is measured using deep level transient spectroscopy and low temperature (86 K) IV measurements. Clear recovery of the photovoltaic parameters is observed during low temperature (T is less than 300 K) solar illuminations (1 sun, AMO) with further recovery at higher temperatures (300 less than T less than 500 K). For example, the output of a cell which was irradiated up to a fluence of 1 x 10(exp 16) cm(sup -2) was observed to recover to within 5 percent of the pre-irradiation output. An apparent correlation between the recovery of I(sub sc) and the annealing of the H4 defect and of the minority carrier trapping centers is observed. An apparent correlation between the recovery of VO, and the annealing of the H5 defect is also observed. These apparent correlations are used to develop a possible model for the mechanism of the recovery of the solar cells

Exterior-Interior Duality for Discrete Graphs

The Exterior-Interior duality expresses a deep connection between the Laplace spectrum in bounded and connected domains in $\mathbb{R}^2$, and the scattering matrices in the exterior of the domains. Here, this link is extended to the study of the spectrum of the discrete Laplacian on finite graphs. For this purpose, two methods are devised for associating scattering matrices to the graphs. The Exterior -Interior duality is derived for both methods.Comment: 15 pages 1 figur

Evidence for a Deep Pore Activation Gate in Small Conductance Ca2+-activated K+ Channels

Small conductance calcium-gated potassium (SK) channels share an overall topology with voltage-gated potassium (Kv) channels, but are distinct in that they are gated solely by calcium (Ca2+), not voltage. For Kv channels there is strong evidence for an activation gate at the intracellular end of the pore, which was not revealed by substituted cysteine accessibility of the homologous region in SK2 channels. In this study, the divalent ions cadmium (Cd2+) and barium (Ba2+), and 2-aminoethyl methanethiosulfonate (MTSEA) were used to probe three sites in the SK2 channel pore, each intracellular to (on the selectivity filter side of) the region that forms the intracellular activation gate of voltage-gated ion channels. We report that Cd2+ applied to the intracellular side of the membrane can modify a cysteine introduced to a site (V391C) just intracellular to the putative activation gate whether channels are open or closed. Similarly, MTSEA applied to the intracellular side of the membrane can access a cysteine residue (A384C) that, based on homology to potassium (K) channel crystal structures (i.e., the KcsA/MthK model), resides one amino acid intracellular to the glycine gating hinge. Cd2+ and MTSEA modify with similar rates whether the channels are open or closed. In contrast, Ba2+ applied to the intracellular side of the membrane, which is believed to block at the intracellular end of the selectivity filter, blocks open but not closed channels when applied to the cytoplasmic face of rSK2 channels. Moreover, Ba2+ is trapped in SK2 channels when applied to open channels that are subsequently closed. Ba2+ pre-block slows MTSEA modification of A384C in open but not in closed (Ba2+-trapped) channels. The findings suggest that the SK channel activation gate resides deep in the vestibule of the channel, perhaps in the selectivity filter itself

Effects of Running on Femoral Articular Cartilage Thickness for Anterior Cruciate Ligament Reconstruction Patients and Non-ACLR Control Subjects

Anterior cruciate ligament reconstruction (ACLR) patients are more likely to develop posttraumatic knee osteoarthritis than non-ACLR counterparts. The effect of running on femoral articular cartilage thickness is unclear. PURPOSE: The purpose of this study was to compare how 30 minutes of running influences femoral articular cartilage thickness for ACLR patients and non-ACLR control subjects. We hypothesized that running would deform the femoral articular cartilage more for the ACLR patients than for the control subjects. METHODS: We recruited 20 individuals with primary unilateral ACLR and 20 matched non-ACLR controls. ACLR patients and control subjects were matched based upon age, gender, BMI, and weekly running mileage. The present procedures were approved by the appropriate institutional board and all subjects provided informed consent before data collection. We used ultrasound imaging to measure femoral articular cartilage thickness before and after 30 minutes of running. The ultrasound images were manually analyzed using ImageJ software by the same investigator. Total femoral articular cartilage cross-sectional area of each image was segmented into three regions: medial, lateral, and intercondylar. Deformation due to the run was compared between the ACLR patients and control subjects for each region using independent t tests (P \u3c 0.05, adjusted for multiple comparisons). RESULTS: The 30-minute run resulted in more deformation for the ACLR patients (0.03 ± 0.01 cm) than the matched controls (0.01 ± 0.01 cm) for the medial region (p \u3c 0.01) of the femoral articular cartilage. Identically, the 30-minute run resulted in more deformation for the ACLR patients (0.03 ± 0.01 cm) than the matched controls (0.01 ± 0.01 cm; p \u3c 0.01) for an average of the entire articular cartilage area (medial, lateral, and intercondylar). No significant differences existed between groups for the lateral or intercondylar regions. CONCLUSION: Thirty minutes of running deformed medial and overall femoral articular cartilage more for ACLR patients than non-ACLR control subjects

Running Biomechanics and Knee Cartilage Health in ACLR Patients

Anterior cruciate ligament reconstruction (ACLR) patients are more likely to subsequently suffer from knee osteoarthritis than non-ACLR counterparts. Exercise is thought to influence articular cartilage, however, it is unclear how running biomechanics are associated with femoral cartilage thickness and composition in ACLR patients. PURPOSE: The purpose of this study was to investigate relationships between running biomechanics and measures of femoral articular cartilage condition (thickness and composition) in ACLR patients and control subjects. METHODS: We used ultrasound and MRI (T2 mapping sequence) to measure articular cartilage thickness and composition, respectively, for 20 ACLR patients (age: 23 ± 3 yrs; mass: 70 ± 10 kg; time post-ACLR: 14.6 ± 6.1 months) and 20 matched controls (age: 22 ± 2 yrs; mass: 67 ± 11 kg). After these measures, all participants completed a 30-minute run on a force-instrumented treadmill. Correlational analyses were used to explore relationships between running biomechanics (vertical ground reaction force (vGRF)) and femoral cartilage thickness and composition (T2 relaxation time). The present procedures were approved by the appropriate institutional board and all subjects provided informed consent before data collection was performed. RESULTS: Significant positive correlations existed for the control subjects only between peak vGRF and overall (r = 0.34; p \u3c 0.01), medial (r = 0.23; p \u3c 0.01), lateral (r = 0.39; p = 0.02), and intercondylar (r = 0.31; p \u3c 0.01) femoral thickness. The ACLR patients showed significant negative correlations between T2 relaxation time for the central-medial region of the femoral condyle, and peak vGRF (r = −0.53; p = 0.01) and vertical impulse due to the vGRF (r = −0.46; p = 0.04). CONCLUSION: These findings offer some limited support for the idea that femoral articular cartilage benefits from increase vGRF during running. This is evidenced by the increased thickness for the control subjects and decreased T2 relaxation time (indicative of increased free-flowing water in the cartilage) for the ACLR patients, as running vGRF increased

Femoral Articular Cartilage Quality, but Not Thickness, Is Decreased for Anterior Cruciate Ligament Reconstruction Patients Relative to Control

Anterior cruciate ligament reconstruction (ACLR) patients are at risk of developing posttraumatic knee osteoarthritis (OA). The etiology of posttraumatic knee OA is complex, potentially involving biomechanical and biochemical factors. Changes in femoral cartilage thickness and composition are associated with knee OA, while current research is ambiguous on cartilage in ACLR patients. PURPOSE: This study aimed to compare femoral cartilage thickness and T2 relaxation time (a compositional measure) between ACLR patients and healthy controls in a resting state. We hypothesized that ACLR patients would exhibit thinner femoral cartilage and increased T2 relaxation times. METHODS: Twenty ACLR patients (6-24 months post-surgery) and 20 matched healthy controls were recruited following institutional board approval. Ultrasound and magnetic resonance imaging data were collected on two separate days, allowing cartilage thickness and composition measurements to be made, respectively. Statistical analyses, including independent t-tests and Holm-Bonferroni corrections, were performed on selected regions of interest. RESULTS: The ACLR group showed increased T2 relaxation times in four of eight femoral regions compared to controls. No significant differences in femoral cartilage thickness were observed between the groups. The primary finding from this study is that ACLR patients did not show differences in femoral cartilage thickness (a morphological measure), but displayed prolonged T2 relaxation times (a compositional measure) compared to controls, at rest. This finding suggests that compositional changes precede morphological shifts in femoral cartilage in early post-ACLR periods (6-24 months). CONCLUSION: These early compositional changes may indicate articular cartilage that is more compressible and subject to increased strain on the solid components of the joint. While ultrasound is a more accessible imaging method, magnetic resonance imaging may provide a more accurate and early evaluation of cartilage quality. Further research is needed to develop practical tools for early detection and monitoring of cartilage degradation in ACLR patients before progression into knee osteoarthritis