An investigation of the relationship between vision development observations and reading performance

An investigation of the relationship between vision development observations and reading performanc

Low-Molecular-Weight Protein Tyrosine Phosphatases of Bacillus subtilis

In gram-negative organisms, enzymes belonging to the low-molecular-weight protein tyrosine phosphatase (LMPTP) family are involved in the regulation of important physiological functions, including stress resistance and synthesis of the polysaccharide capsule. LMPTPs have been identified also in gram-positive bacteria, but their functions in these organisms are presently unknown. We cloned two putative LMPTPs from Bacillus subtilis, YfkJ and YwlE, which are highly similar to each other in primary structure as well as to LMPTPs from gram-negative bacteria. When purified from overexpressing Escherichia coli strains, both enzymes were able to dephosphorylate p-nitrophenyl-phosphate and phosphotyrosine-containing substrates in vitro but showed significant differences in kinetic parameters and sensitivity to inhibitors. Transcriptional analyses showed that yfkJ was transcribed at a low level throughout the growth cycle and underwent a σB-dependent transcriptional upregulation in response to ethanol stress. The transcription of ywlE was growth dependent but stress insensitive. Genomic deletion of each phosphatase-encoding gene led to a phenotype of reduced bacterial resistance to ethanol stress, which was more marked in the ywlE deletion strain. Our study suggests that YfkJ and YwlE play roles in B. subtilis stress resistance

Ground Testing a LWIR Imaging Radiometer for an Upcoming Smallsat Mission

The Compact Infrared Radiometer in Space (CIRiS) mission is envisioned as a calibration laboratory in space to test source viewing order and timing. Furthermore, it demonstrates the use of vertically aligned carbon nanotubes as a very high emissivity source and an uncooled microbolometer. Due to the focus on instrument calibration, this program spends a significant amount of time in the thermal vacuum chamber to attain a good quality ground calibration. The resulting test plan is presented, along with the plan as implemented, and several lessons learned from the process

Global trends in the number and diversity of managed pollinator species

Cultivation of pollinator-dependent crops has expanded globally, increasing our reliance on insect pollination. This essential ecosystem service is provided by a wide range of managed and wild pollinators whose abundance and diversity are thought to be in decline, threatening sustainable food production. The Western honey bee (Apis mellifera) is amongst the best-monitored insects but the state of other managed pollinators is less well known. Here, we review the status and trends of all managed pollinators based on publicly accessible databases and the published literature. We found that, on a global scale, the number of managed A. mellifera colonies has increased by 85% since 1961, driven mainly by Asia. This contrasts with high reported colony overwinter mortality, especially in North America (average 26% since 2007) and Europe (average 16% since 2007). Increasing agricultural dependency on pollinators as well as threats associated with managing non-native pollinators have likely spurred interest in the management of alternative species for pollination, including bumble bees, stingless bees, solitary bees, and flies that have higher efficiency in pollinating specific crops. We identify 66 insect species that have been, or are considered to have the potential to be, managed for crop pollination, including seven bumble bee species and subspecies currently commercially produced mainly for the pollination of greenhouse-grown tomatoes and two species that are trap-nested in New Zealand. Other managed pollinators currently in use include eight solitary bee species (mainly for pollination services in orchards or alfalfa fields) and three fly species (mainly used in enclosures and for seed production). Additional species in each taxonomic category are under consideration for pollinator management. Examples include 15 stingless bee species that are able to buzz-pollinate, will fly in enclosures, and some of which have a history of management for honey production; their use for pollination is not yet established. To ensure sustainable, integrated pollination management in agricultural landscapes, the risks, as well as the benefits of novel managed pollinator species must be considered. We, therefore, urge the prioritization of biodiversity-friendly measures maintaining native pollinator species diversity to provide ecosystem resilience to future environmental changes.Fil: Osterman, Julia. Martin Luther University Halle-Wittenberg; Alemania. Helmholtz Centre for Environmental Research; AlemaniaFil: Aizen, Marcelo Adrian. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Patagonia Norte. Instituto de Investigaciones en Biodiversidad y Medioambiente. Universidad Nacional del Comahue. Centro Regional Universidad Bariloche. Instituto de Investigaciones en Biodiversidad y Medioambiente; Argentina. Institute for Advanced Study; AlemaniaFil: Biesmeijer, Jacobus C.. Leiden University; Países Bajos. Naturalis Biodiversity Center; Países BajosFil: Bosch, Jordi. Universitat Autònoma de Barcelona; EspañaFil: Howlett, Brad G.. The New Zealand Institute for Plant and Food Research Ltd.; Nueva ZelandaFil: Inouye, David W.. University of Maryland; Estados Unidos. Rocky Mountain Biological Laboratory; Estados UnidosFil: Jung, Chuleui. Andong National University; Corea del SurFil: Martins, Dino J.. University of Princeton; Estados UnidosFil: Medel, Rodrigo. Universidad de Chile; ChileFil: Pauw, Anton. Stellenbosch University; SudáfricaFil: Seymour, Colleen L.. University of Cape Town; Sudáfrica. South African National Biodiversity Institute; SudáfricaFil: Paxton, Robert J. German Centre for integrative Biodiversity Research; Alemania. Martin Luther University Halle-Wittenberg; Alemani

Editorial: Translational insights into mechanisms and therapy of organ dysfunction in sepsis and trauma

Multiple organ dysfunction or even failure after sepsis or trauma is due to a dysregulated host response. Currently, besides (surgical) source control (e.g., control of bleeding or drainage of abscesses) and administration of antimicrobial drugs, therapeutic approaches are limited to supportive care. Advances in our understanding of the key pathophysiological pathways involved in the excessive inflammation triggered by trauma, sepsis and/or ischemia-reperfusion have had limited impact. The 28 article in this Research Topic focus on the molecular mechanisms behind (hyper) inflammation after sepsis or trauma, with special emphasis on preclinical and translational studies that target potential organ-protective and/or -resuscitative therapeutic strategies. Most studies report rodent models of trauma and elective surgery (three articles), non-microbial hyper-inflammation induced with endotoxin exposure (LPS; seven articles) and chemical pancreatitis (one article), and cecal ligation and puncture-induced sepsis (six articles). Additional papers summarize investigations of human material (six articles) or fully-resuscitated large animal models (two articles). These article are complimented by four reviews and a commentary

Orbiting Carbon Observatory-2 (OCO-2) cloud screening algorithms: validation against collocated MODIS and CALIOP data

The objective of the National Aeronautics and Space Administration's (NASA) Orbiting Carbon Observatory-2 (OCO-2) mission is to retrieve the column-averaged carbon dioxide (CO₂) dry air mole fraction (XCO2) from satellite measurements of reflected sunlight in the near-infrared. These estimates can be biased by clouds and aerosols, i.e., contamination, within the instrument's field of view. Screening of the most contaminated soundings minimizes unnecessary calls to the computationally expensive Level 2 (L2) X_(CO₂) retrieval algorithm. Hence, robust cloud screening methods have been an important focus of the OCO-2 algorithm development team. Two distinct, computationally inexpensive cloud screening algorithms have been developed for this application. The A-Band Preprocessor (ABP) retrieves the surface pressure using measurements in the 0.76 µm O₂ A band, neglecting scattering by clouds and aerosols, which introduce photon path-length differences that can cause large deviations between the expected and retrieved surface pressure. The Iterative Maximum A Posteriori (IMAP) Differential Optical Absorption Spectroscopy (DOAS) Preprocessor (IDP) retrieves independent estimates of the CO₂ and H₂O column abundances using observations taken at 1.61 µm (weak CO₂ band) and 2.06 µm (strong CO₂ band), while neglecting atmospheric scattering. The CO₂ and H₂O column abundances retrieved in these two spectral regions differ significantly in the presence of cloud and scattering aerosols. The combination of these two algorithms, which are sensitive to different features in the spectra, provides the basis for cloud screening of the OCO-2 data set. To validate the OCO-2 cloud screening approach, collocated measurements from NASA's Moderate Resolution Imaging Spectrometer (MODIS), aboard the Aqua platform, were compared to results from the two OCO-2 cloud screening algorithms. With tuning of algorithmic threshold parameters that allows for processing of  ≃ 20–25 % of all OCO-2 soundings, agreement between the OCO-2 and MODIS cloud screening methods is found to be  ≃ 85 % over four 16-day orbit repeat cycles in both the winter (December) and spring (April–May) for OCO-2 nadir-land, glint-land and glint-water observations. No major, systematic, spatial or temporal dependencies were found, although slight differences in the seasonal data sets do exist and validation is more problematic with increasing solar zenith angle and when surfaces are covered in snow and ice and have complex topography. To further analyze the performance of the cloud screening algorithms, an initial comparison of OCO-2 observations was made to collocated measurements from the Cloud-Aerosol Lidar with Orthogonal Polarization (CALIOP) aboard the Cloud-Aerosol Lidar and Infrared Pathfinder Satellite Observations (CALIPSO). These comparisons highlight the strength of the OCO-2 cloud screening algorithms in identifying high, thin clouds but suggest some difficulty in identifying some clouds near the surface, even when the optical thicknesses are greater than 1

Who Benefits From Teams? Comparing Workers, Supervisors, and Managers

This paper offers a political explanation for the diffusion and sustainability of team-based work systems by examining the differential outcomes of team structures for 1200 workers, supervisors, and middle managers in a large unionized telecommunications company. Regression analyses show that participation in self-managed teams is associated with significantly higher levels of perceived discretion, employment security, and satisfaction for workers and the opposite for supervisors. Middle managers who initiate team innovations report higher employment security, but otherwise are not significantly different from their counterparts who are not involved in innovations. By contrast, there are no significant outcomes for employees associated with their participation in offline problem-solving teams

Regulation of Glutamine Carrier Proteins by RNF5 Determines Breast Cancer Response to ER Stress-Inducing Chemotherapies

SummaryMany tumor cells are fueled by altered metabolism and increased glutamine (Gln) dependence. We identify regulation of the L-glutamine carrier proteins SLC1A5 and SLC38A2 (SLC1A5/38A2) by the ubiquitin ligase RNF5. Paclitaxel-induced ER stress to breast cancer (BCa) cells promotes RNF5 association, ubiquitination, and degradation of SLC1A5/38A2. This decreases Gln uptake, levels of TCA cycle components, mTOR signaling, and proliferation while increasing autophagy and cell death. Rnf5-deficient MMTV-PyMT mammary tumors were less differentiated and showed elevated SLC1A5 expression. Whereas RNF5 depletion in MDA-MB-231 cells promoted tumorigenesis and abolished paclitaxel responsiveness, SLC1A5/38A2 knockdown elicited opposing effects. Inverse RNF5hi/SLC1A5/38A2lo expression was associated with positive prognosis in BCa. Thus, RNF5 control of Gln uptake underlies BCa response to chemotherapies

The RAST Server: Rapid Annotations using Subsystems Technology

<p>Abstract</p> <p>Background</p> <p>The number of prokaryotic genome sequences becoming available is growing steadily and is growing faster than our ability to accurately annotate them.</p> <p>Description</p> <p>We describe a fully automated service for annotating bacterial and archaeal genomes. The service identifies protein-encoding, rRNA and tRNA genes, assigns functions to the genes, predicts which subsystems are represented in the genome, uses this information to reconstruct the metabolic network and makes the output easily downloadable for the user. In addition, the annotated genome can be browsed in an environment that supports comparative analysis with the annotated genomes maintained in the SEED environment.</p> <p>The service normally makes the annotated genome available within 12–24 hours of submission, but ultimately the quality of such a service will be judged in terms of accuracy, consistency, and completeness of the produced annotations. We summarize our attempts to address these issues and discuss plans for incrementally enhancing the service.</p> <p>Conclusion</p> <p>By providing accurate, rapid annotation freely to the community we have created an important community resource. The service has now been utilized by over 120 external users annotating over 350 distinct genomes.</p