Declarative vs Rule-based Control for Flocking Dynamics

The popularity of rule-based flocking models, such as Reynolds' classic flocking model, raises the question of whether more declarative flocking models are possible. This question is motivated by the observation that declarative models are generally simpler and easier to design, understand, and analyze than operational models. We introduce a very simple control law for flocking based on a cost function capturing cohesion (agents want to stay together) and separation (agents do not want to get too close). We refer to it as {\textit declarative flocking} (DF). We use model-predictive control (MPC) to define controllers for DF in centralized and distributed settings. A thorough performance comparison of our declarative flocking with Reynolds' model, and with more recent flocking models that use MPC with a cost function based on lattice structures, demonstrate that DF-MPC yields the best cohesion and least fragmentation, and maintains a surprisingly good level of geometric regularity while still producing natural flock shapes similar to those produced by Reynolds' model. We also show that DF-MPC has high resilience to sensor noise.Comment: 7 Page

An STL-based Approach to Resilient Control for Cyber-Physical Systems

We present ResilienC, a framework for resilient control of Cyber-Physical Systems subject to STL-based requirements. ResilienC utilizes a recently developed formalism for specifying CPS resiliency in terms of sets of $(\mathit{rec},\mathit{dur})$ real-valued pairs, where $\mathit{rec}$ represents the system's capability to rapidly recover from a property violation (recoverability), and $\mathit{dur}$ is reflective of its ability to avoid violations post-recovery (durability). We define the resilient STL control problem as one of multi-objective optimization, where the recoverability and durability of the desired STL specification are maximized. When neither objective is prioritized over the other, the solution to the problem is a set of Pareto-optimal system trajectories. We present a precise solution method to the resilient STL control problem using a mixed-integer linear programming encoding and an a posteriori $\epsilon$-constraint approach for efficiently retrieving the complete set of optimally resilient solutions. In ResilienC, at each time-step, the optimal control action selected from the set of Pareto-optimal solutions by a Decision Maker strategy realizes a form of Model Predictive Control. We demonstrate the practical utility of the ResilienC framework on two significant case studies: autonomous vehicle lane keeping and deadline-driven, multi-region package delivery.Comment: 11 pages, 6 figure

An STL-based Formulation of Resilience in Cyber-Physical Systems

Resiliency is the ability to quickly recover from a violation and avoid future violations for as long as possible. Such a property is of fundamental importance for Cyber-Physical Systems (CPS), and yet, to date, there is no widely agreed-upon formal treatment of CPS resiliency. We present an STL-based framework for reasoning about resiliency in CPS in which resiliency has a syntactic characterization in the form of an STL-based Resiliency Specification (SRS). Given an arbitrary STL formula $\varphi$, time bounds $\alpha$ and $\beta$, the SRS of $\varphi$, $R_{\alpha,\beta}(\varphi)$, is the STL formula $\neg\varphi\mathbf{U}_{[0,\alpha]}\mathbf{G}_{[0,\beta)}\varphi$, specifying that recovery from a violation of $\varphi$ occur within time $\alpha$ (recoverability), and subsequently that $\varphi$ be maintained for duration $\beta$ (durability). These $R$-expressions, which are atoms in our SRS logic, can be combined using STL operators, allowing one to express composite resiliency specifications, e.g., multiple SRSs must hold simultaneously, or the system must eventually be resilient. We define a quantitative semantics for SRSs in the form of a Resilience Satisfaction Value (ReSV) function $r$ and prove its soundness and completeness w.r.t. STL's Boolean semantics. The $r$-value for $R_{\alpha,\beta}(\varphi)$ atoms is a singleton set containing a pair quantifying recoverability and durability. The $r$-value for a composite SRS formula results in a set of non-dominated recoverability-durability pairs, given that the ReSVs of subformulas might not be directly comparable (e.g., one subformula has superior durability but worse recoverability than another). To the best of our knowledge, this is the first multi-dimensional quantitative semantics for an STL-based logic. Two case studies demonstrate the practical utility of our approach.Comment: 16 pages excluding references and appendix (23 pages in total), 6 figure

Easyfig: a genome comparison visualizer

Summary: Easyfig is a Python application for creating linear comparison figures of multiple genomic loci with an easy-to-use graphical user interface. BLAST comparisons between multiple genomic regions, ranging from single genes to whole prokaryote chromosomes, can be generated, visualized and interactively coloured, enabling a rapid transition between analysis and the preparation of publication quality figures

Band alignment at metal/ferroelectric interfaces: insights and artifacts from first principles

Based on recent advances in first-principles theory, we develop a general model of the band offset at metal/ferroelectric interfaces. We show that, depending on the polarization of the film, a pathological regime might occur where the metallic carriers populate the energy bands of the insulator, making it metallic. As the most common approximations of density functional theory are affected by a systematic underestimation of the fundamental band gap of insulators, this scenario is likely to be an artifact of the simulation. We provide a number of rigorous criteria, together with extensive practical examples, to systematically identify this problematic situation in the calculated electronic and structural properties of ferroelectric systems. We discuss our findings in the context of earlier literature studies, where the issues described in this work have often been overlooked. We also discuss formal analogies to the physics of polarity compensation at LaAlO3/SrTiO3 interfaces, and suggest promising avenues for future research.Comment: 29 pages, 23 figure