80%susceptible

Time-lapse images of spread of T7 phage epidemics in Escherichia coli spatially structured populations over 48 hours. Archive contains images of the following treatment: 80% susceptible, 20% resistant cells

70%susceptible

Time-lapse images of spread of T7 phage epidemics in Escherichia coli spatially structured populations over 48 hours. Archive contains images of the following treatment: 70% susceptible, 30% resistant cells

10%susceptible

Time-lapse images of spread of T7 phage epidemics in Escherichia coli spatially structured populations over 48 hours. Archive contains images of the following treatment: 10% susceptible, 90% resistant cells

30%susceptible

Time-lapse images of spread of T7 phage epidemics in Escherichia coli spatially structured populations over 48 hours. Archive contains images of the following treatment: 30% susceptible, 70% resistant cells

100%susceptible_control_run3

Time-lapse images of spread of T7 phage epidemics in Escherichia coli spatially structured populations over 48 hours. Archive contains images of the following treatment: all 100% susceptible controls of run 3

20%susceptible

Time-lapse images of spread of T7 phage epidemics in Escherichia coli spatially structured populations over 48 hours. Archive contains images of the following treatment: 20% susceptible, 80% resistant cells

90%susceptible

Time-lapse images of spread of T7 phage epidemics in Escherichia coli spatially structured populations over 48 hours. Archive contains images of the following treatment: 90% susceptible, 10% resistant cells

100%susceptible_control_run2

Time-lapse images of spread of T7 phage epidemics in Escherichia coli spatially structured populations over 48 hours. Archive contains images of the following treatment: all 100% susceptible controls of run 2

40%susceptible

Time-lapse images of spread of T7 phage epidemics in Escherichia coli spatially structured populations over 48 hours. Archive contains images of the following treatment: 40% susceptible, 60% resistant cells

Lohse_2012_data.tar

The python scripts polarize.py and polarizeSumStat condense a file of multiple alignmnets (fasta format) into either a list of binary alignmnets (O=ancestral, 1=derived state) or a list summary statitsics (for details see Mathematica notebook Lohse_et_al 2012_Analysis). Both are simple text files which use Mathematica's list notation. The archive Lohse_2012_data.tar contains both the python scripts and the data files for each of the four parasitoid species. These are used as input for the likelihood analysis (see in Mathematica notebook Lohse_et_al 2012_Analysis)