Fluid properties at high pressures and temperatures: Experimental and modelling challenges

Thermophysical properties impact many aspects of the chemical process industries. Here three example areas, primarily in the energy sector, are highlighted to provide context for the experimental and modelling challenges associated with obtaining fluid property data at high pressures and temperatures (HPHT). These three areas include the recovery of petroleum reserves in ultra-deep reservoirs, the use of lubricants to reduce frictional losses in the automotive industries, and the use of high-pressure, common rail diesel fuel delivery to reduce soot emissions for greener environments. The accurate knowledge of thermodynamic and transport properties in these three focused areas minimizes associated operating uncertainties and accelerates safe, reliable, and robust process and product development

Short-term effects of intratracheal installations of yttrium barium copper oxide

Inhalation exposures to the new high-temperature ({Tc}) superconductor (SC) materials can occur during manufacturing and fabrication processes. In this exploratory study, we examined the pulmonary response to the deposition of an yttrium barium copper oxide SC powder. Groups of Sprague-Dawley rats were intratracheally instilled with either 10 mg or 20 mg of SC in phosphate-buffered saline (PBS) or with PBS only. The animals were sacrificed 60 days later for histopathologic assessments of their lungs. Lung lesions in the 10-mg SC group were found mainly in alveolar ducts and proximal alveoli. The lesions consisted of variably sized foci of interstitial thickening involving accumulations of macrophages. These interstitial aggregates were often times centered around one or more extracellular crystals, which, presumably, were retained SC product. Trichome stains also demonstrated the presence of fibrosis in the walls of alveoli surrounding the granulomas. Similar interstitial-macrophage accumulations and fibrosis were observed in rats instilled with 20 mg of SC. However, alveolus like structures lined by ciliated cuboidal epithelium near interstitial granulomas were additionally found in the lungs of some of the animals in this latter group. These results suggest SC material of the yttrium barium copper oxide type may represent a potential exposure hazard to the lung

ROCker Models for Reliable Detection and Typing of Short-Read Sequences Carrying beta-Lactamase Genes

Identification of genes encoding beta-lactamases (BLs) from short-read sequences remains challenging due to the high frequency of shared amino acid functional domains and motifs in proteins encoded by BL genes and related non-BL gene sequences. Divergent BL homologs can be frequently missed during similarity searches, which has important practical consequences for monitoring antibiotic resistance. To address this limitation, we built ROCker models that targeted broad classes (e.g., class A, B, C, and D) and individual families (e.g., TEM) of BLs and challenged them with mock 150-bp- and 250-bp-read data sets of known composition. ROCker identifies most-discriminant bit score thresholds in sliding windows along the sequence of the target protein sequence and hence can account for nondiscriminative domains shared by unrelated proteins. BL ROCker models showed a 0% false-positive rate (FPR), a 0% to 4% false-negative rate (FNR), and an up-to-50-fold-higher F1 score [2 x precision x recall/(precision + recall)] compared to alternative methods, such as similarity searches using BLASTx with various e-value thresholds and BL hidden Markov models, or tools like DeepARG, ShortBRED, and AMRFinder. The ROCker models and the underlying protein sequence reference data sets and phylogenetic trees for read placement are freely available through http://enve-omics.ce.gatech.edu/data/rocker-bla. Application of these BL ROCker models to metagenomics, metatranscriptomics, and high-throughput PCR gene amplicon data should facilitate the reliable detection and quantification of BL variants encoded by environmental or clinical isolates and microbiomes and more accurate assessment of the associated public health risk, compared to the current practice. IMPORTANCE Resistance genes encoding beta-lactamases (BLs) confer resistance to the widely prescribed antibiotic class beta-lactams. Therefore, it is important to assess the prevalence of BL genes in clinical or environmental samples for monitoring the spreading of these genes into pathogens and estimating public health risk. However, detecting BLs in short-read sequence data is technically challenging. Our ROCker model-based bioinformatics approach showcases the reliable detection and typing of BLs in complex data sets and thus contributes toward solving an important problem in antibiotic resistance surveillance. The ROCker models developed substantially expand the toolbox for monitoring antibiotic resistance in clinical or environmental settings

Radio Bursts Associated with Flare and Ejecta in the 13 July 2004 Event

We investigate coronal transients associated with a GOES M6.7 class flare and a coronal mass ejection (CME) on 13 July 2004. During the rising phase of the flare, a filament eruption, loop expansion, a Moreton wave, and an ejecta were observed. An EIT wave was detected later on. The main features in the radio dynamic spectrum were a frequency-drifting continuum and two type II bursts. Our analysis shows that if the first type II burst was formed in the low corona, the burst heights and speed are close to the projected distances and speed of the Moreton wave (a chromospheric shock wave signature). The frequency-drifting radio continuum, starting above 1 GHz, was formed almost two minutes prior to any shock features becoming visible, and a fast-expanding piston (visible as the continuum) could have launched another shock wave. A possible scenario is that a flare blast overtook the earlier transient, and ignited the first type II burst. The second type II burst may have been formed by the same shock, but only if the shock was propagating at a constant speed. This interpretation also requires that the shock-producing regions were located at different parts of the propagating structure, or that the shock was passing through regions with highly different atmospheric densities. This complex event, with a multitude of radio features and transients at other wavelengths, presents evidence for both blast-wave-related and CME-related radio emissions.Comment: 14 pages, 6 figures; Solar Physics Topical Issue, in pres

Near-Limb Zeeman and Hanle Diagnostics

"Weak" magnetic-field diagnostics in faint objects near the bright solar disk are discussed in terms of the level of non-object signatures, in particular, of the stray light in telescopes. Calculated dependencies of the stray light caused by diffraction at the 0.5-, 1.6-, and 4-meter entrance aperture are presented. The requirements for micro-roughness of refractive and reflective primary optics are compared. Several methods for reducing the stray light (the Lyot coronagraphic technique, multiple stages of apodizing in the focal and exit pupil planes, apodizing in the entrance aperture plane with a special mask), and reducing the random and systematic errors are noted. An acceptable level of stray light in telescopes is estimated for the V-profile recording with a signal-to-noise ratio greater than three. Prospects for the limb chromosphere magnetic measurements are indicated.Comment: 11 pages, 3 figure