ENGAGING STUDENTS IN RESEARCH: THE USE OF STRUCTURED PROFESSIONAL DIALOGUE

Graduate students frequently have difficulty defining, developing, and resolving research problems in a manner consistent with the agricultural economics community. Here, we report on a seminar designed to assist graduate students integrate subject matter courses into independent research proposals through participation in professional dialogue. Professional dialogue involves developing arguments to explain and resolve questions where the explanations are supported by warranted evidence and appropriately qualified. The premise of the seminar is that more active problem solvers are developed using professional dialogue to sharpen critical thinking and writing skills.Teaching/Communication/Extension/Profession,

Purpose and potential for commodity exchanges in African economies:

This paper reviews the purpose and potential of commodity exchanges in Africa. Drawing from the existing literature and using indicative empirics, it examines the conditions that enable successful exchanges, highlights the special challenges to setting up exchanges in Africa, and reviews alternatives to domestic exchanges. We argue that many critical preconditions for the successful establishment of commodity exchanges in Africa remain binding in the short to medium term. The development of commodity exchanges in the region is impeded by the relatively small size of domestic commodity markets, the weak physical and communication infrastructure, a lack of supportive legal and regulatory environments, and the likelihood of policy interventions, particularly in the staple cereals market. Meanwhile, the demand for a domestic commodity exchange for export crops may be limited due to the availability of well-established exchanges abroad and functioning auction floors. The paper highlights three points: (a) efforts to launch exchanges in Africa should realistically assess whether basic conditions for success can be met, (b) if the pre-conditions cannot be met, the use of existing exchanges abroad or the development of regional exchanges may be more feasible than the establishment of national commodity exchanges, and (c) the goals of risk management and reduced transaction costs might be achieved more effectively by improving market fundamentals through investments in transportation, information services, or other financial institutions.commodity exchanges, Risk management, Market development,

Shear-induced damped oscillations in an epithelium depend on actomyosin contraction and E-cadherin cell adhesion.

Shear forces between cells occur during global changes in multicellular organization during morphogenesis and tissue growth, yet how cells sense shear forces and propagate a response across a tissue is unknown. We found that applying exogenous shear at the midline of an epithelium induced a local, short-term deformation near the shear plane, and a long-term collective oscillatory movement across the epithelium that spread from the shear-plane and gradually dampened. Inhibiting actomyosin contraction or E-cadherin trans-cell adhesion blocked oscillations, whereas stabilizing actin filaments prolonged oscillations. Combining these data with a model of epithelium mechanics supports a mechanism involving the generation of a shear-induced mechanical event at the shear plane which is then relayed across the epithelium by actomyosin contraction linked through E-cadherin. This causes an imbalance of forces in the epithelium, which is gradually dissipated through oscillatory cell movements and actin filament turnover to restore the force balance across the epithelium

How mobile are dye adsorbates and acetonitrile molecules on the surface of TiO2 nanoparticles? A quasi-elastic neutron scattering study

Motions of molecules adsorbed to surfaces may control the rate of charge transport within monolayers in systems such as dye sensitized solar cells. We used quasi-elastic neutron scattering (QENS) to evaluate the possible dynamics of two small dye moieties, isonicotinic acid (INA) and bis-isonicotinic acid (BINA), attached to TiO2 nanoparticles via carboxylate groups. The scattering data indicate that moieties are immobile and do not rotate around the anchoring groups on timescales between around 10 ps and a few ns (corresponding to the instrumental range). This gives an upper limit for the rate at which conformational fluctuations can assist charge transport between anchored molecules. Our observations suggest that if the conformation of larger dye molecules varies with time, it does so on longer timescales and/or in parts of the molecule which are not directly connected to the anchoring group. The QENS measurements also indicate that several layers of acetonitrile solvent molecules are immobilized at the interface with the TiO2 on the measurement time scale, in reasonable agreement with recent classical molecular dynamics results

First-principles calculation of DNA looping in tethered particle experiments

We calculate the probability of DNA loop formation mediated by regulatory proteins such as Lac repressor (LacI), using a mathematical model of DNA elasticity. Our model is adapted to calculating quantities directly observable in Tethered Particle Motion (TPM) experiments, and it accounts for all the entropic forces present in such experiments. Our model has no free parameters; it characterizes DNA elasticity using information obtained in other kinds of experiments. [...] We show how to compute both the "looping J factor" (or equivalently, the looping free energy) for various DNA construct geometries and LacI concentrations, as well as the detailed probability density function of bead excursions. We also show how to extract the same quantities from recent experimental data on tethered particle motion, and then compare to our model's predictions. [...] Our model successfully reproduces the detailed distributions of bead excursion, including their surprising three-peak structure, without any fit parameters and without invoking any alternative conformation of the LacI tetramer. Indeed, the model qualitatively reproduces the observed dependence of these distributions on tether length (e.g., phasing) and on LacI concentration (titration). However, for short DNA loops (around 95 basepairs) the experiments show more looping than is predicted by the harmonic-elasticity model, echoing other recent experimental results. Because the experiments we study are done in vitro, this anomalously high looping cannot be rationalized as resulting from the presence of DNA-bending proteins or other cellular machinery. We also show that it is unlikely to be the result of a hypothetical "open" conformation of the LacI tetramer.Comment: See the supplement at http://www.physics.upenn.edu/~pcn/Ms/TowlesEtalSuppl.pdf . This revised version accepted for publication at Physical Biolog

Void Dynamics

Cosmic voids are becoming key players in testing the physics of our Universe. Here we concentrate on the abundances and the dynamics of voids as these are among the best candidates to provide information on cosmological parameters. Cai, Padilla \& Li (2014) use the abundance of voids to tell apart Hu \& Sawicki $f(R)$ models from General Relativity. An interesting result is that even though, as expected, voids in the dark matter field are emptier in $f(R)$ gravity due to the fifth force expelling away from the void centres, this result is reversed when haloes are used to find voids. The abundance of voids in this case becomes even lower in $f(R)$ compared to GR for large voids. Still, the differences are significant and this provides a way to tell apart these models. The velocity field differences between $f(R)$ and GR, on the other hand, are the same for halo voids and for dark matter voids. Paz et al. (2013), concentrate on the velocity profiles around voids. First they show the necessity of four parameters to describe the density profiles around voids given two distinct void populations, voids-in-voids and voids-in-clouds. This profile is used to predict peculiar velocities around voids, and the combination of the latter with void density profiles allows the construction of model void-galaxy cross-correlation functions with redshift space distortions. When these models are tuned to fit the measured correlation functions for voids and galaxies in the Sloan Digital Sky Survey, small voids are found to be of the void-in-cloud type, whereas larger ones are consistent with being void-in-void. This is a novel result that is obtained directly from redshift space data around voids. These profiles can be used to remove systematics on void-galaxy Alcock-Pacinsky tests coming from redshift-space distortions.Comment: 8 pages, 4 figures, to appear in the proceedings of IAU308 Symposium "The Zeldovich Universe

Clues on void evolution II: Measuring density and velocity profiles on SDSS galaxy redshift space distortions

Using the redshift-space distortions of void-galaxy cross-correlation function we analyse the dynamics of voids embedded in different environments. We compute the void-galaxy crosscorrelation function in the Sloan Digital Sky Survey (SDSS) in terms of distances taken along the line of sight and projected into the sky. We analyse the distortions on the cross-correlation isodensity levels and we find anisotropic isocontours consistent with expansion for large voids with smoothly rising density profiles and collapse for small voids with overdense shells surrounding them. Based on the linear approach of gravitational collapse theory we developed a parametric model of the void-galaxy redshift space cross-correlation function. We show that this model can be used to successfully recover the underlying velocity and density profiles of voids from redshift space samples. By applying this technique to real data, we confirm the twofold nature of void dynamics: large voids typically are in an expansion phase whereas small voids tend to be surrounded by overdense and collapsing regions. These results are obtained from the SDSS spectroscopic galaxy catalogue and also from semi-analytic mock galaxy catalogues, thus supporting the viability of the standard ΛCDM model to reproduce large scale structure and dynamics.Fil: Paz, Dante Javier. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Córdoba. Instituto de Astronomia Teórica y Experimental. Universidad Nacional de Córdoba. Observatorio Astronómico de Córdoba. Instituto de Astronomia Teórica y Experimental; ArgentinaFil: Lares Harbin Latorre, Marcelo. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Córdoba. Instituto de Astronomia Teórica y Experimental. Universidad Nacional de Córdoba. Observatorio Astronómico de Córdoba. Instituto de Astronomia Teórica y Experimental; ArgentinaFil: Ceccarelli, Maria Laura. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Córdoba. Instituto de Astronomia Teórica y Experimental. Universidad Nacional de Córdoba. Observatorio Astronómico de Córdoba. Instituto de Astronomia Teórica y Experimental; ArgentinaFil: Padilla, Nelson David. Pontificia Universidad Católica de Chile; Chile. Consejo Nacional de Investigaciones Científicas y Técnicas; ArgentinaFil: Garcia Lambas, Diego Rodolfo. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Córdoba. Instituto de Astronomia Teórica y Experimental. Universidad Nacional de Córdoba. Observatorio Astronómico de Córdoba. Instituto de Astronomia Teórica y Experimental; Argentin

Clues on void evolution – I. Large-scale galaxy distributions around voids

We perform a statistical study focused on void environments. We examine galaxy density profiles around voids in the Sloan Digital Sky Survey (SDSS), finding a correlation between void-centric distance to the shell of maximum density and void radius when a maximum in overdensity exists. We analyse voids with and without a surrounding overdense shell in the SDSS. We find that small voids are more frequently surrounded by overdense shells whereas the radial galaxy density profile of large voids tends to rise smoothly towards the mean galaxy density. We analyse the fraction of voids surrounded by overdense shells finding a continuous trend with void radius. The differences between voids with and without an overdense shell around them can be understood in terms of whether the voids are, on average, in the process of collapsing or continuing their expansion, respectively, in agreement with previous theoretical expectations. We use numerical simulations coupled to semi-analytic models of galaxy formation in order to test and interpret our results. The very good agreement between the mock catalogue results and the observations provides additional support to the viability of a Λ cold dark matter model to reproduce the large-scale structure of the Universe as defined by the void network, in a way which has not been analysed previously.Fil: Ceccarelli, Maria Laura. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Córdoba. Instituto de Astronomia Teórica y Experimental. Universidad Nacional de Córdoba. Observatorio Astronómico de Córdoba. Instituto de Astronomia Teórica y Experimental; ArgentinaFil: Paz, Dante Javier. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Córdoba. Instituto de Astronomia Teórica y Experimental. Universidad Nacional de Córdoba. Observatorio Astronómico de Córdoba. Instituto de Astronomia Teórica y Experimental; ArgentinaFil: Lares Harbin Latorre, Marcelo. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Córdoba. Instituto de Astronomia Teórica y Experimental. Universidad Nacional de Córdoba. Observatorio Astronómico de Córdoba. Instituto de Astronomia Teórica y Experimental; ArgentinaFil: Padilla, Nelson David. Pontificia Universidad Católica de Chile; Chile. Consejo Nacional de Investigaciones Científicas y Técnicas; ArgentinaFil: Garcia Lambas, Diego Rodolfo. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Córdoba. Instituto de Astronomia Teórica y Experimental. Universidad Nacional de Córdoba. Observatorio Astronómico de Córdoba. Instituto de Astronomia Teórica y Experimental; Argentin