Ballistic energy transport in PEG oligomers

Energy transport between the terminal groups of the azido-PEG-succinimide ester compounds with a number of repeating PEG units of 0, 4, 8, and 12 was studied using relaxation-assisted two-dimensional infrared spectroscopy. The through-bond energy transport time, evaluated as the waiting time at which the cross peak maximum is reached, Tmax, was found to be linearly dependent on the chain length for chain lengths up to 60 Å suggesting a ballistic energy transport regime. The through-bond energy transport speed is found to be ca. 500 m/s. The cross-peak amplitude at the maximum decays exponentially with the chain length with a characteristic decay distance of 15.7 ± 1 Å. Substantial mode delocalization across the PEG bridge is found, which can support the energy propagation as a wavepacket

Ballistic Energy Transport in Oligomers

ConspectusThe development of nanocomposite materials with desired heat management properties, including nanowires, layered semiconductor structures, and self-assembled monolayer (SAM) junctions, attracts broad interest. Such materials often involve polymeric/oligomeric components and can feature high or low thermal conductivity, depending on their design. For example, in SAM junctions made of alkane chains sandwiched between metal layers, the thermal conductivity can be very low, whereas the fibers of ordered polyethylene chains feature high thermal conductivity, exceeding that of many pure metals. The thermal conductivity of nanostructured materials is determined by the energy transport between and within each component of the material, which all need to be understood for optimizing the properties. For example, in the SAM junctions, the energy transport across the metal-chain interface as well as the transport through the chains both determine the overall heat conductivity, however, to separate these contributions is difficult. Recently developed relaxation-assisted two-dimensional infrared (RA 2DIR) spectroscopy is capable of studying energy transport in individual molecules in the time domain. The transport in a molecule is initiated by exciting an IR-active group (a tag); the method records the influence of the excess energy on another mode in the molecule (a reporter). The energy transport time can be measured for different reporters, and the transport speed through the molecule is evaluated. Various molecules were interrogated by RA 2DIR: in molecules without repeating units (disordered), the transport mechanism was expected and found to be diffusive. The transport via an oligomer backbone can potentially be ballistic, as the chain offers delocalized vibrational states. Indeed, the transport regime via three tested types of oligomers, alkanes, polyethyleneglycols, and perfluoroalkanes was found to be ballistic, whereas the transport within the end groups was diffusive. Interestingly, the transport speeds via these chains were different. Moreover, the transport speed was found to be dependent on the vibrational mode initiating the transport. For the difference in the transport speeds to be explained, the chain bands involved in the wavepacket formation were analyzed, and specific optical bands of the chain were identified as the energy transporters. For example, the transport initiated in alkanes by the stretching mode of the azido end group (2100 cm^–1) occurs predominantly via the CH₂ twisting and wagging chain bands, but the transport initiated by the C=O stretching modes of the carboxylic acid or succinimide ester end groups occurs via C–C stretching and CH₂ rocking bands of the alkane chain. Direct formation of the wavepacket within the CH₂ twisting and wagging chain bands occurs when the transport is initiated by the NN stretching mode (1270 cm-1) of the azido end-group. The transport via optical chain bands in oligomers involves rather large vibrational quanta (700–1400 cm^–1), resulting in efficient energy delivery to substantial distances. Achieved quantitative description of various energy transport steps in oligomers, including the specific contributions of different chain bands, can result in a better understanding of the transport steps in nanocomposite materials, including SAM junctions, and lead towards designing systems for molecular electronics with a controllable energy transport speed

Nonprotecting Group Synthesis of a Phospholipase C Activatable Probe with an Azo-Free Quencher

The near-infrared fluorescent activatable smart probe Pyro-phosphatidylethanolamine (PtdEtn)-QSY was synthesized and observed to selectively fluoresce in the presence of phosphatidylcholine-specific phospholipase C (PC-PLC). PC-PLC is an important biological target as it is known to be upregulated in a variety of cancers, including triple negative breast cancer. Pyro-PtdEtn-QSY features a QSY21 quenching moiety instead of the Black Hole Quencher-3 (BHQ-3) used previously because the latter contains an azo bond, which could lead to biological instability

Ballistic energy transport in PEG oligomers

Energy transport between the terminal groups of the azido-PEG-succinimide ester compounds with a number of repeating PEG units of 0, 4, 8, and 12 was studied using relaxation-assisted two-dimensional infrared spectroscopy. The through-bond energy transport time, evaluated as the waiting time at which the cross peak maximum is reached, Tmax, was found to be linearly dependent on the chain length for chain lengths up to 60 Å suggesting a ballistic energy transport regime. The through-bond energy transport speed is found to be ca. 500 m/s. The cross-peak amplitude at the maximum decays exponentially with the chain length with a characteristic decay distance of 15.7 ± 1 Å. Substantial mode delocalization across the PEG bridge is found, which can support the energy propagation as a wavepacket

Band-Selective Ballistic Energy Transport in Alkane Oligomers: Toward Controlling the Transport Speed

Intramolecular transport of vibrational energy in two series of oligomers featuring alkane chains of various length was studied by relaxation-assisted two-dimensional infrared spectroscopy. The transport was initiated by exciting various end-group modes (tags) such as different modes of the azido (ν­(NN) and ν­(NN)), carboxylic acid (ν­(CO)), and succinimide ester (ν_as(CO)) with short mid-IR laser pulses. It is shown that the transport via alkane chains is ballistic and the transport speed is dependent on the type of the tag mode that initiates the transport. The transport speed of 8.0 Å/ps was observed when initiated by either ν­(CO) or ν_as(CO). When initiated by ν­(NN) and ν­(NN), the transport speed of 14.4 ± 2 and 11 ± 4 Å/ps was observed. Analysis of the vibrational relaxation channels of different tags, combined with the results for the group velocity evaluation, permits identification of the chain bands predominantly contributing to the transport for different cases of the transport initiation. For the transport initiated by ν­(NN) the CH₂ twisting and wagging chain bands were identified as the major energy transport channels. For the transport initiated by ν­(CO), the C–C stretching and CH₂ rocking chain bands served as major energy transporters. The transport initiated by ν­(NN) results in direct formation of the wave packet within the CH₂ twisting and wagging chain bands. These developments can aid in designing molecular systems featuring faster and more controllable energy transport in molecules

Тerminology of rectal cancer: consensus agreement of the expert working group

Unified terminology is a necessary condition for successful interdisciplinary communication within the field of oncology. The variety of anatomical, pathomorphological, and clinical terms used in rectal cancer is often accompanied by their ambiguous interpretation both in domestic and foreign scientific literature. This not only complicates the interaction between specialists, but also complicates the comparison of the results of rectal cancer treatment obtained in different medical institutions. Based on the analysis of recent domestic and international scientific and methodological literature on rectal cancer, the key terms used in the diagnosis and treatment planning of rectal cancer were selected, followed by a two-time online discussion of their interpretations by experts from the Russian Society of Radiologists and Therapeutic Radiation Oncologists, the Association of Oncologists of Russia, and the Russian Association of Therapeutic Radiation Oncologists until reaching consensus (≥80%) of experts on all items. Terms that fail to attain consensus were excluded in the final list. A list of anatomical, pathomorphological, and clinical terms used in the diagnosis, staging, and treatment planning of rectal cancer has been compiled and, based on expert consensus, their interpretation has been determined. A lexicon recommended in the description and formulation of the conclusion of diagnostic studies in patients with rectal cancer is proposed

Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition)

In 2008, we published the first set of guidelines for standardizing research in autophagy. Since then, this topic has received increasing attention, and many scientists have entered the field. Our knowledge base and relevant new technologies have also been expanding. Thus, it is important to formulate on a regular basis updated guidelines for monitoring autophagy in different organisms. Despite numerous reviews, there continues to be confusion regarding acceptable methods to evaluate autophagy, especially in multicellular eukaryotes. Here, we present a set of guidelines for investigators to select and interpret methods to examine autophagy and related processes, and for reviewers to provide realistic and reasonable critiques of reports that are focused on these processes. These guidelines are not meant to be a dogmatic set of rules, because the appropriateness of any assay largely depends on the question being asked and the system being used. Moreover, no individual assay is perfect for every situation, calling for the use of multiple techniques to properly monitor autophagy in each experimental setting. Finally, several core components of the autophagy machinery have been implicated in distinct autophagic processes (canonical and noncanonical autophagy), implying that genetic approaches to block autophagy should rely on targeting two or more autophagy-related genes that ideally participate in distinct steps of the pathway. Along similar lines, because multiple proteins involved in autophagy also regulate other cellular pathways including apoptosis, not all of them can be used as a specific marker for bona fide autophagic responses. Here, we critically discuss current methods of assessing autophagy and the information they can, or cannot, provide. Our ultimate goal is to encourage intellectual and technical innovation in the field