Plant sulfate transporters in the low phytic acid network : some educated guesses

A few new papers report that mutations in some genes belonging to the group 3 of plant sulfate transporter family result in low phytic acid phenotypes, drawing novel strategies and approaches for engineering the low-phytate trait in cereal grains. Here, we shortly review the current knowledge on phosphorus/sulfur interplay and sulfate transport regulation in plants, to critically discuss some hypotheses that could help in unveiling the physiological links between sulfate transport and phosphorus accumulation in seeds

Cinnamyl alcohol dehydrogenases in the mesocarp of ripening fruit of Prunus persica genotypes with different flesh characteristics: changes in activity and protein and transcript levels

Development of fruit flesh texture quality traits may involve the metabolism of phenolic compounds. This study presents molecular and biochemical results on the possible role played by cinnamyl alcohol dehydrogenase (CAD; EC 1.1.1.195) during ripening [S3, S4 I (pre-climacteric) and S4 III (climacteric) stages] of peach [Prunus persica (L.) Batsch] fruit with different flesh firmness [non-melting flesh (NMF) \u2018Oro A\u2019/melting flesh (MF) \u2018Springcrest\u2019 and \u2018Sanguinella\u2019] and color (blood-flesh Sanguinella). A total of 24 putative full-length PRUPE_CAD genes were identified (in silico analysis) in the peach genome. The most abundant CAD isoforms, encoded by genes located on scaffolds 8 and 6, were probed by specifically developed anti-PRUPE_CAD sc8 and by anti-FaCAD (PRUPE_CAD sc6) polyclonal antibodies, respectively. PRUPE_CAD sc8 proteins (SDS-PAGE and native-PAGE/western blot) appeared responsible for the CAD activity (in vitro/in-gel assays) that increased with ripening (parallel to PRUPE_ACO1 transcripts accumulation and ethylene evolution) only in the mesocarp of Oro A and blood-flesh Sanguinella. Accumulation of PRUPE_CAD sc8 transcripts (semi-quantitative RT-PCR) occurred in all three cultivars, but in Oro A and Springcrest it was not always accompanied by that of the related proteins, suggesting possible post-transcriptional regulation. Flesh firmness, as well as levels of lignin, total phenolics and, where present (Sanguinella), anthocyanins, declined with ripening, suggesting that, at least in the studied peach cultivars, CAD activity is related to neither lignification nor differences in flesh firmness (NMF/MF). Further studies are necessary to clarify whether the high levels of CAD activity/expression in Sanguinella play a role in determining the characteristics of this blood-flesh fruit

Analysis and modeling of processes involved with salt tolerance and rice

Salinity is a worldwide problem for rice (Oryza sativa L.) cultivation, and a number of breeding programs targeting increased salt tolerance are ongoing. A new trait-based mathematical model for salt stress on rice was recently proposed, characterized by a high level of detail in the description of physiological mechanisms dealing with crop response to salinity. In this study, dedicated growth chamber experiments were performed where three rice cultivars with different degrees of tolerance were grown under different salinity levels. The aim was to improve the understanding of physiological mechanisms like Na+ uptake and sequestration in structural tissues, and to validate the model using new datasets where temporal dynamics in plant response to salt stress were analyzed. Model evaluation demonstrated strong agreement between measured and simulated dry weights of plant organs (e.g., R2 = 0.88-0.97 for aboveground biomass), [Na+] in plant tissues (R2 = 0.73-0.88), and green leaf area index (R2 = 0.71-0.99). These results demonstrate the reliability of the model and support its adoption within studies aimed at analyzing or predicting the response of different cultivars to temporal dynamics of Na+ concentration in soil and water

Transmembrane transporters and salt tolerance in temperate japonica rice

Several investigations aimed at identifying molecular tools useful for the selection and/or the constitution of high-yield salt tolerant rice have been successfully carried out, concerning in particular indica and/ or tropical rice genotypes. Te global warming process is nowadays determining the intrusion of saline wedge into coastal fresh-water streams, and the soil salt concentration of many European rice areas, where temperate rice cultivars are mainly grown, is more and more increasing. In order to identify molecular markers and/or new loci related to salt tolerance, a Genome Wide Association Study (GWAS) has been carried out using a panel of 277 japonica rice accessions. Te panel has been subjected to Genotyping By Sequencing and phenotyping concerning tolerance to a mild-salt stress soil condition (5 dS m-1) expressed at the 4th-5th leaf developmental stage using the Standard Evaluation Score (SES) proposed by IRRI. On the basis of GWAS, a QTL including a few genes that in the indica rice genome are localized within the major salinity tolerance-related QTL \u2018SalTol\u2019 have been identified. Among them, the Os01g0337500 gene encoding the vacuolar H+-pyrophosphatase 6 (OsOVP6) is present. Since the role of the OsOVP6 activity is considered central in regulating the cellular Na+ homeostasis in both roots and leaves, investigations comparing some elements of the complex mechanisms involved in this process have been carried out. A physiological approach evaluating this possibility has been conducted in two japonica rice varieties (Galileo and Virgo) that resulted salt-tolerant, in one japonica rice variety (PL12) known to be quite salt-susceptible, and in the salt-tolerant indica inbred genotype FL478 (containing the \u2018SalTol\u2019 QTL) as reference genotype. Te root and shoot Na+/K+ ratio, Na+ influx and K+ efflux, H+ extrusion activity, cytosolic and vacuolar pH by in vivo 31P-NMR techniques were evaluated in roots of the four rice genotypes. Te results obtained, together with the electrophysiological evaluation of the whole root Na+ conductance, allow to define a picture that may explain the different salt tolerance observed among the rice genotypes analyzed. As a whole, these results confirm the interest towards a deep allele mining analysis, concerning OsOVP6, within the most significant members of the japonica rice accession panel under investigation

The Trehalose-6-phosphate/SnRK1 system in the response to saline conditions during germination of two rice (O. sativa L., ssp. japonica) cultivars with different salt sensitivity

Soil salinity is extremely harmful for crops, and, among cereals, for rice (Oryza sativa L.), with particular regard to the ssp. japonica. Seed germination and seedling emergence are among the phenological stages particularly sensitive to this stress condition. A Genome Wide Association Study (GWAS) with a total of 31.421 SNPs was conducted on a collection of 277 japonica rice accessions phenotyped under mid-salinity considering germination kinetic parameters and seedling emergence rate. A few Marker-Trait Associations were identified on the basis of significant genotype-phenotype association analysis. Among the genes putatively involved in the salt response, two were particularly interesting: OsTPP7 (chromosome 9) and OsTPP10 (chromosome 7), both belonging to the family encoding Trehalose-6-Phosphate Phosphatase (TPP) catalyzing the dephosphorylation of Trehalose-6-Phosphate (T6P) to Trehalose. Salt stress affects carbohydrate production and the mobilization/use of C storage compounds altering the sink-source relationships, sugar allocation and energy metabolism. In this framework, the ratios T6P/Tre, regulated by TPP activity, acts as a signal in the cascade of events that regulate, through sugar metabolism, plant development with particular regard to seed germination and seedling growth. In turn, T6P regulates the activity of Snf1-Related protein Kinase-1 (SnRK1), a metabolic sensor able to regulate \u3b1-amylase and fundamental in maintaining C homeostasis under stress. Aim of the work was to establish the role of the SnRK1/Tre6P/Tre/Sucrose system and in particular of the OsTPP7 and OsTPP10 genes in the tolerance of japonica rice to salt stress during seed germination and early seedling development. In two model rice accessions (Olcenengo, tolerant, and SR113, sensitive) with opposite behavior in salt stress, biochemical and molecular analyses were conducted. In particular, have been considered: in the growing embryos, T6P, Tre, and sucrose levels, and OsTPP7-OsTPP10 gene expression; in the endosperm, the time-course of \u3b1-amylase activity. Te results define a picture coherent with the different effects of salt stress in Olcenengo and SR113. Functional characterization of the OsTPP10 gene and its allele mining analysis within the 277 rice accessions are in progress

A possible role of the trehalose/trehalose-6-phosphate/SnRK1 system in rice response to salt stress

Among the abiotic stresses exacerbated by climate change, soil salinity is one of the most harmful for crops. Rice (Oryza sativa L.) is a very salt-sensitive cereal, with particular regard to the cultivars belonging to the subspecies japonica. In order to identify genomic traits conferring salt tolerance, a collection of 277 rice accessions (ssp. japonica) has been phenotypized under mild-salinity considering germination kinetic parameters and seedling emergence rate. Genotyping By Sequencing (GBS) followed by a Genome Wide Association Study (GWASs) were carried out. A total of 31.421 SNPs were used for the analysis. Significant genotypic-phenotypic associations were observed and a few Marker-Trait Associations (MTAs) were identified. By alignment with the rice reference genome (Os-Nipponbare-Reference-IRGSP-1.0), some of the genes putatively involved in salt stress were highlighted. Among them, our interest has been focused on OsTPP7 (chromosome 9) and OsTPP10 (chromosome 7), genes that belong to the OsTPP gene family encoding for Trehalose-6-Phosphate Phosphatase (TPP) enzymes catalyzing the dephosphorylation of Trehalose-6-Phosphate (T6P) to Trehalose (Tre). The level of T6P plays a central role in abiotic stress tolerance, acting as a signal in the cascade of events regulating sugar metabolism (sucrose) during seed germination and seedling growth. This activity is mediated by Snf1-Related protein Kinase-1 (SnRK1), a metabolic sensor fundamental in maintaining carbon homeostasis under stress condition. Biochemical and molecular analyses were performed on two rice accessions showing opposite behavior under salt stress (Olcenengo, tolerant, and SR113, sensitive). Results concerning T6P, Tre and sucrose levels in growing embryos, the evaluation of the time course of \u3b1-amylase enzyme (target of the SnRK1 system) activity and of OsTPP10-OsTPP7 gene expression appear to allow us to define a picture coherent with the different effects of salt stress in Olcenengo and SR113. Functional characterization of OsTPP10 gene and its allele mining analysis within the 277 rice accessions are in progress

The crucial role of sulfur in a phytoremediation process : Lessons from the Poaceae species as phytoremediants : a review

Among living organisms plants are the most tolerant to pollution. This fact, emphasizes their utility for phytoremediation, a promising technology for environmental cleanup. Many botanical families include multiple species which exhibit a notable phytoremediation potential. Each of these species enjoys certain advantages, but at the same encounters some limitations with respect to its application as phytoremediants. Careful selection of the appropriate family and genotype to match the particular pollutant and environment is crucial for successful phytoremediation; the Poaceae family seems to be one of the most important for this technology. Phytoremediation of inorganic and organic pollutants largely depends on sulfur (S) metabolism. Therefore, S sufficient conditions and efficient S metabolism constitute the prerequisites for the effectiveness of the process. In the modern societies, heavy-metal pollution of soils is causing ever greater problems, exacerbated by the fact that most heavy metals accumulated in plants may, either directly or indirectly, find their way into animals and human beings. Wheat, rice and maize are among the world\u2019s most prominent crops, whilst cadmium (Cd) and nickel (Ni) are among the most toxic metals. Therefore, the physiological adaptations induced in cereals, by Cd for example, are alarming and subsequently, the responsiveness of these species has been studied extensively as model plants. Studies with Arundo donax as phytoremediant have proven that this species is tolerant to increased concentrations of Cd and Ni in its rhizosphere, and as a consequence, it can be cultivated in contaminated areas for phytoremediation and energy production purposes. S-deficiency of crops is frequently reported, especially during the past two decades, worldwide. The main reasons for this deficiency are: the reduction of sulfur dioxide emission from power plants and various industrial sources, the ever increasing use of high-analysis low-S-containing fertilizers and the decreasing use of S-containing fertilizers, S-containing fungicides, pesticides and high-yielding varieties. A sufficient S supply of cereal crops is required in early growth stages, which cannot be fully compensated by S fertilization during later growth. Elemental S proved to contribute continuously to the crop\u2019s S nutrition due to its constant release after oxidation. Therefore, the early diagnosis of S deficiency, the profiling of S forms in the soil of the phytoremediation site and the prediction of S-fertilizer requirements are of key importance for achieving a successful process

Changes in endopolygalacturonase levels and characterization of a putative endo-PG gene during fruit softening in peach genotypes with nonmelting and melting flesh fruit phenotypes

The changes in endopolygalacturonase (endo-PG) levels and endo-PG expression in nonmelting flesh (NMF) and melting flesh (MF) peach fruits (Prunus persica) during softening were studied. The endo-PG gene was analysed to identify polymorphisms exploitable for early marker-assisted selection (MAS) of flesh texture. The role of endo-PG in softening was assessed by western and northern blotting and by biochemical analyses. Polymorphisms in the endo-PG gene were revealed by reverse transcription-polymerase chain reaction (RT-PCR) and sequencing. An endo-PG protein was detected in both NMF and MF fruits. The levels of this endo-PG protein were higher and increased with softening in MF fruits, but remained lower and were constant in NMF fruits. The different levels of endo-PG appeared to be caused by the differential expression of an endo-PG gene, whose open-reading frame (ORF) showed five single nucleotide polymorphisms (SNPs) in NMF 'Oro A' compared with MF 'Bolero'. One of these SNPs allowed us to determine the allelic configuration at the melting flesh (M) locus and also seemed to be exploitable for early MAS in other NMF/MF phenotypes. The NMF phenotype does not seem to be caused by a large deletion of the endo-PG gene. (copyright) New Phytologist (2006)

Analysis of cadmium translocation, partitioning and tolerance in six barley (Hordeum vulgare L.) cultivars as a function of thiol metabolism

Six barley cultivars widely differing for cadmium (Cd) tolerance, partitioning, and translocation were analyzed in relation to their thiol metabolism. Results indicated that Cd tolerance was not clearly related to the total amount of Cd absorbed by plants, resulting instead closely dependent on the capacity of the cultivars to trap the metal into the roots. Such behaviors suggested the existence of root mechanisms preserving shoots from Cd-induced oxidative damages, as indicated by the analysis of thiobarbituric acid-reactive substances \u2014diagnostic indicators of oxidative stress\u2014whose increases in the shoots were negatively related to Cd root retention and tolerance. Cd exposure differentially affected glutathione (GSH) and phytochelatin (PC) levels in the tissues of each barley cultivar. The capacity to produce PCs appeared as a specific characteristic of each barley cultivar, since it did not depend on Cd concentration in the roots and resulted negatively related to the concentration of the metal in the shoots, indicating the existence of a cultivar-specific interference of Cd on GSH biosynthesis, as confirmed by the existence of close positive linear relationships between the effect of Cd on GSH levels and PC accumulation in both roots and shoots. The six barley cultivars also differed for their capacity to load Cd ions into the xylem, which was negatively related to PC content in the roots. Taken as a whole, these data indicated that the different capacity of each cultivar to maintain GSH homeostasis under Cd stress may strongly affect PC accumulation and, thus, Cd tolerance and translocation

Genetic and chemical comparison among Camelina sativa varieties

Camelina sativa (Camelina sativa L. Crantz.) belonging to the mustard family, typically contain about 40 % oil in the seeds, 90 % of which is made up of unsaturated fatty acids: about 30\u201340% fraction of alpha linolenic acid, 15\u201325% fraction of linoleic acid, 15% fraction of oleic acid and around 15% eicosenoic acid. Genetic studies of the genome of C. sativa suggest a polyploid structure being more probably a hexaploid species. In European countries and Russia, camelina was grown as an agricultural crop before the II World War; now the renewed interest on this crop is mainly due to the search for new sources of essential fatty acids, particularly n-3(omega-3) fatty acids to be used in human food and animal feed products. In this work we compared different varieties of camelina grown in different conditions: in experimental field, greenhouse and grow chamber. We characterized the genetic material by SSRs to assess the genetic diversity to assist future breeding programs. In particular we have set up a breeding program aimed at reducing the glucosinolate content in camelina seed because of its toxic effect when present at high levels in seeds used as feed. Glucosinolate are sulphur-containing glucosides, found mainly in Brassicaceae, involved in plant defense. In the last year these molecules have been studied also because of their activities as natural pesticides and their protective effects against cancer, heart disease and chronic inflammatory disease. We are now characterizing camelina seeds for glucosinolate content in order to develop a diagnostic marker based on the analytical determination of the sulfur isotopic signature (\uf06434S). Such a marker will allow to easily select genetic materials with different glucosinolate contents without the use of complex and expensive analytical techniques