Functional annotation of the transcriptome of Sorghum bicolor in response to osmotic stress and abscisic acid

<p>Abstract</p> <p>Background</p> <p>Higher plants exhibit remarkable phenotypic plasticity allowing them to adapt to an extensive range of environmental conditions. Sorghum is a cereal crop that exhibits exceptional tolerance to adverse conditions, in particular, water-limiting environments. This study utilized next generation sequencing (NGS) technology to examine the transcriptome of sorghum plants challenged with osmotic stress and exogenous abscisic acid (ABA) in order to elucidate genes and gene networks that contribute to sorghum's tolerance to water-limiting environments with a long-term aim of developing strategies to improve plant productivity under drought.</p> <p>Results</p> <p>RNA-Seq results revealed transcriptional activity of 28,335 unique genes from sorghum root and shoot tissues subjected to polyethylene glycol (PEG)-induced osmotic stress or exogenous ABA. Differential gene expression analyses in response to osmotic stress and ABA revealed a strong interplay among various metabolic pathways including abscisic acid and 13-lipoxygenase, salicylic acid, jasmonic acid, and plant defense pathways. Transcription factor analysis indicated that groups of genes may be co-regulated by similar regulatory sequences to which the expressed transcription factors bind. We successfully exploited the data presented here in conjunction with published transcriptome analyses for rice, maize, and Arabidopsis to discover more than 50 differentially expressed, drought-responsive gene orthologs for which no function had been previously ascribed.</p> <p>Conclusions</p> <p>The present study provides an initial assemblage of sorghum genes and gene networks regulated by osmotic stress and hormonal treatment. We are providing an RNA-Seq data set and an initial collection of transcription factors, which offer a preliminary look into the cascade of global gene expression patterns that arise in a drought tolerant crop subjected to abiotic stress. These resources will allow scientists to query gene expression and functional annotation in response to drought.</p

A global experiment on motivating social distancing during the COVID-19 pandemic

Significance Communicating in ways that motivate engagement in social distancing remains a critical global public health priority during the COVID-19 pandemic. This study tested motivational qualities of messages about social distancing (those that promoted choice and agency vs. those that were forceful and shaming) in 25,718 people in 89 countries. The autonomy-supportive message decreased feelings of defying social distancing recommendations relative to the controlling message, and the controlling message increased controlled motivation, a less effective form of motivation, relative to no message. Message type did not impact intentions to socially distance, but people’s existing motivations were related to intentions. Findings were generalizable across a geographically diverse sample and may inform public health communication strategies in this and future global health emergencies. Abstract Finding communication strategies that effectively motivate social distancing continues to be a global public health priority during the COVID-19 pandemic. This cross-country, preregistered experiment (n = 25,718 from 89 countries) tested hypotheses concerning generalizable positive and negative outcomes of social distancing messages that promoted personal agency and reflective choices (i.e., an autonomy-supportive message) or were restrictive and shaming (i.e., a controlling message) compared with no message at all. Results partially supported experimental hypotheses in that the controlling message increased controlled motivation (a poorly internalized form of motivation relying on shame, guilt, and fear of social consequences) relative to no message. On the other hand, the autonomy-supportive message lowered feelings of defiance compared with the controlling message, but the controlling message did not differ from receiving no message at all. Unexpectedly, messages did not influence autonomous motivation (a highly internalized form of motivation relying on one’s core values) or behavioral intentions. Results supported hypothesized associations between people’s existing autonomous and controlled motivations and self-reported behavioral intentions to engage in social distancing. Controlled motivation was associated with more defiance and less long-term behavioral intention to engage in social distancing, whereas autonomous motivation was associated with less defiance and more short- and long-term intentions to social distance. Overall, this work highlights the potential harm of using shaming and pressuring language in public health communication, with implications for the current and future global health challenges

Holocene carbon emissions as a result of anthropogenic land cover change

Humans have altered the Earth’s land surface since the Paleolithic mainly by clearing woody vegetation first to improve hunting and gathering opportunities, and later to provide agricultural cropland. In the Holocene, agriculture was established on nearly all continents and led to widespread modification of terrestrial ecosystems. To quantify the role that humans played in the global carbon cycle over the Holocene, we developed a new, annually resolved inventory of anthropogenic land cover change from 8000 years ago to the beginning of large-scale industrialization (ad 1850). This inventory is based on a simple relationship between population and land use observed in several European countries over preindustrial time. Using this data set, and an alternative scenario based on the HYDE 3.1 land use data base, we forced the LPJ DGVM in a series of continuous simulations to evaluate the impacts of ALCC on terrestrial carbon storage during the preindustrial Holocene. Our model setup allowed us to quantify the importance of land degradation caused by repeated episodes of land use followed by abandonment. By 3 ka BP, cumulative carbon emissions caused by anthropogenic land cover change in our new scenario ranged between 84 and 102 Pg, translating to c. 7 ppm of atmospheric CO2. By ad 1850, emissions were 325–357 Pg in the new scenario, in contrast to 137–189 Pg when driven by HYDE. Regional events that resulted in local emissions or uptake of carbon were often balanced by contrasting patterns in other parts of the world. While we cannot close the carbon budget in the current study, simulated cumulative anthropogenic emissions over the preindustrial Holocene are consistent with the ice core record of atmospheric d13CO2 and support the hypothesis that anthropogenic activities led to the stabilization of atmospheric CO2 concentrations at a level that made the world substantially warmer than it otherwise would be