2,982 research outputs found
Reaction Monitoring and Structural Characterisation of Coordination Driven Self-Assembled Systems by Ion Mobility-Mass Spectrometry
Nature creates exquisite molecular assemblies, required for the molecular-level functions of life, via self-assembly. Understanding and harnessing these complex processes presents an immense opportunity for the design and fabrication of advanced functional materials. However, the significant industrial potential of self-assembly to fabricate highly functional materials is hampered by a lack of knowledge of critical reaction intermediates, mechanisms, and kinetics. As we move beyond the covalent synthetic regime, into the domain of non-covalent interactions occupied by self-assembly, harnessing and embracing complexity is a must, and non-targeted analyses of dynamic systems are becoming increasingly important. Coordination driven self-assembly is an important subtype of self-assembly that presents several wicked analytical challenges. These challenges are “wicked” due the very complexity desired confounding the analysis of products, intermediates, and pathways, therefore limiting reaction optimisation, tuning, and ultimately, utility. Ion Mobility-Mass Spectrometry solves many of the most challenging analytical problems in separating and analysing the structure of both simple and complex species formed via coordination driven self-assembly. Thus, due to the emerging importance of ion mobility mass spectrometry as an analytical technique tackling complex systems, this review highlights exciting recent applications. These include equilibrium monitoring, structural and dynamic analysis of previously analytically inaccessible complex interlinked structures and the process of self-sorting. The vast and largely untapped potential of ion mobility mass spectrometry to coordination driven self-assembly is yet to be fully realised. Therefore, we also propose where current analytical approaches can be built upon to allow for greater insight into the complexity and structural dynamics involved in self-assembly
Template-Stripped Multifunctional Wedge and Pyramid Arrays for Magnetic Nanofocusing and Optical Sensing
We present large-scale reproducible
fabrication of multifunctional ultrasharp metallic structures on planar
substrates with capabilities including magnetic field nanofocusing
and plasmonic sensing. Objects with sharp tips such as wedges and
pyramids made with noble metals have been extensively used for enhancing
local electric fields via the lightning-rod effect or plasmonic nanofocusing.
However, analogous nanofocusing of magnetic fields using sharp tips
made with magnetic materials has not been widely realized. Reproducible
fabrication of sharp tips with magnetic as well as noble metal layers
on planar substrates can enable straightforward application of their
material and shape-derived functionalities. We use a template-stripping
method to produce plasmonic-shell-coated nickel wedge and pyramid
arrays at the wafer-scale with tip radius of curvature close to 10
nm. We further explore the magnetic nanofocusing capabilities of these
ultrasharp substrates, deriving analytical formulas and comparing
the results with computer simulations. These structures exhibit nanoscale
spatial control over the trapping of magnetic microbeads and nanoparticles
in solution. Additionally, enhanced optical sensing of analytes by
these plasmonic-shell-coated substrates is demonstrated using surface-enhanced
Raman spectroscopy. These methods can guide the design and fabrication
of novel devices with applications including nanoparticle manipulation,
biosensing, and magnetoplasmonics
Cladding of Mg alloy with Zr based BMG Alloy
In the present work, an attempt has been made to clad AZ31 magnesium alloy with Zr-based bulk metallic glassy alloy (Vit-1), by casting method. The interface studies conducted using SEM-EDS line scan indicate that a good bond is formed at the clad interface of Zr and Mg. And the mechanism involved is discussed herein.110Ysciescopu
Al-TiH2 Composite Foams Magnesium Alloy
The work presented here in describes the synthesis of aluminum based titanium-hydride particulate composite by casting method and its foaming behavior of magnesium alloy. Results obtained indicate that the Al-10TiH(2) composite can be synthesized successfully by casting method. Further, results also reveal that closed-cell magnesium alloy foam can be synthesized by using Al-10TiH(2) composite as a foaming agent.111Ysciescopu
Negative regulation of syntaxin4/SNAP-23/VAMP2-mediated membrane fusion by Munc18c <i>In Vitro</i>
Background: Translocation of the facilitative glucose transporter GLUT4 from an intracellular store to the plasma membrane is responsible for the increased rate of glucose transport into fat and muscle cells in response to insulin. This represents a specialised form of regulated membrane trafficking. Intracellular membrane traffic is subject to multiple levels of regulation by conserved families of proteins in all eukaryotic cells. Notably, all intracellular fusion events require SNARE proteins and Sec1p/Munc18 family members. Fusion of GLUT4-containing vesicles with the plasma membrane of insulin-sensitive cells involves the SM protein Munc18c, and is regulated by the formation of syntaxin 4/SNAP23/VAMP2 SNARE complexes. Methodology/Principal Findings Here we have used biochemical approaches to characterise the interaction(s) of Munc18c with its cognate SNARE proteins and to examine the role of Munc18c in regulating liposome fusion catalysed by syntaxin 4/SNAP23/VAMP2 SNARE complex formation. We demonstrate that Munc18c makes contacts with both t- and v-SNARE proteins of this complex, and directly inhibits bilayer fusion mediated by the syntaxin 4/SNAP23/VAMP2 SNARE complex. Conclusion/Significance Our reductionist approach has enabled us to ascertain a direct inhibitory role for Munc18c in regulating membrane fusion mediated by syntaxin 4/SNAP23/VAMP2 SNARE complex formation. It is important to note that two different SM proteins have recently been shown to stimulate liposome fusion mediated by their cognate SNARE complexes. Given the structural similarities between SM proteins, it seems unlikely that different members of this family perform opposing regulatory functions. Hence, our findings indicate that Munc18c requires a further level of regulation in order to stimulate SNARE-mediated membrane fusion
Comparison of serological assays in human Middle East respiratory syndrome (MERS)-coronavirus infection
Plaque reduction neutralisation tests (PRNT), microneutralisation (MN), Middle East respiratory syndrome (MERS)-spike pseudoparticle neutralisation (ppNT) and MERS S1-enzyme-linked immunosorbent assay (ELISA) antibody titres were compared using 95 sera from 17 patients with MERS, collected two to 46 days after symptom onset. Neutralisation tests correlated well with each other and moderately well with S1 ELISA. Moreover to compare antigenic similarity of genetically diverse MERS-CoV clades, the response of four sera from two patients sampled at two time periods during the course of illness were tested by 90% PRNT. Genetically diverse MERS-CoV clades were antigenically homogenous.published_or_final_versio
Horizontal DNA transfer mechanisms of bacteria as weapons of intragenomic conflict
Horizontal DNA transfer (HDT) is a pervasive mechanism of diversification in many microbial species, but its primary evolutionary role remains controversial. Much recent research has emphasised the adaptive benefit of acquiring novel DNA, but here we argue instead that intragenomic conflict provides a coherent framework for understanding the evolutionary origins of HDT. To test this hypothesis, we developed a mathematical model of a clonally descended bacterial population undergoing HDT through transmission of mobile genetic elements (MGEs) and genetic transformation. Including the known bias of transformation toward the acquisition of shorter alleles into the model suggested it could be an effective means of counteracting the spread of MGEs. Both constitutive and transient competence for transformation were found to provide an effective defence against parasitic MGEs; transient competence could also be effective at permitting the selective spread of MGEs conferring a benefit on their host bacterium. The coordination of transient competence with cell-cell killing, observed in multiple species, was found to result in synergistic blocking of MGE transmission through releasing genomic DNA for homologous recombination while simultaneously reducing horizontal MGE spread by lowering the local cell density. To evaluate the feasibility of the functions suggested by the modelling analysis, we analysed genomic data from longitudinal sampling of individuals carrying Streptococcus pneumoniae. This revealed the frequent within-host coexistence of clonally descended cells that differed in their MGE infection status, a necessary condition for the proposed mechanism to operate. Additionally, we found multiple examples of MGEs inhibiting transformation through integrative disruption of genes encoding the competence machinery across many species, providing evidence of an ongoing "arms race." Reduced rates of transformation have also been observed in cells infected by MGEs that reduce the concentration of extracellular DNA through secretion of DNases. Simulations predicted that either mechanism of limiting transformation would benefit individual MGEs, but also that this tactic's effectiveness was limited by competition with other MGEs coinfecting the same cell. A further observed behaviour we hypothesised to reduce elimination by transformation was MGE activation when cells become competent. Our model predicted that this response was effective at counteracting transformation independently of competing MGEs. Therefore, this framework is able to explain both common properties of MGEs, and the seemingly paradoxical bacterial behaviours of transformation and cell-cell killing within clonally related populations, as the consequences of intragenomic conflict between self-replicating chromosomes and parasitic MGEs. The antagonistic nature of the different mechanisms of HDT over short timescales means their contribution to bacterial evolution is likely to be substantially greater than previously appreciated
Mass extinctions and supernova explosions
A nearby supernova (SN) explosion could have negatively influenced life on
Earth, maybe even been responsible for mass extinctions. Mass extinction poses
a significant extinction of numerous species on Earth, as recorded in the
paleontologic, paleoclimatic, and geological record of our planet. Depending on
the distance between the Sun and the SN, different types of threats have to be
considered, such as ozone depletion on Earth, causing increased exposure to the
Sun's ultraviolet radiation, or the direct exposure of lethal x-rays. Another
indirect effect is cloud formation, induced by cosmic rays in the atmosphere
which result in a drop in the Earth's temperature, causing major glaciations of
the Earth. The discovery of highly intensive gamma ray bursts (GRBs), which
could be connected to SNe, initiated further discussions on possible
life-threatening events in Earth's history. The probability that GRBs hit the
Earth is very low. Nevertheless, a past interaction of Earth with GRBs and/or
SNe cannot be excluded and might even have been responsible for past extinction
events.Comment: Chapter for forthcoming book: Handbook of Supernovae, P. Murdin and
A. Alsabeti (eds.), Springer International Publishing (in press
MERS-CoV antibody responses 1 Year after symptom onset, South Korea, 2015
We investigated the kinetics of the Middle East respiratory syndrome coronavirus (MERS-CoV) neutralizing and spike protein antibody titers over the course of 1 year in 11 patients who were confirmed by reverse transcription PCR to have been infected during the outbreak in South Korea in 2015. Robust antibody responses were detected in all survivors who had severe disease; responses remained detectable, albeit with some waning, for <1 year. The duration of viral RNA detection (but not viral load) in sputum significantly correlated with the antibody response magnitude. The MERS S1 ELISA antibody titers correlated well with the neutralizing antibody response. Antibody titers in 4 of 6 patients who had mild illness were undetectable even though most had evidence of pneumonia. This finding implies that MERS-CoV seroepidemiologic studies markedly underestimate the extent of mild and asymptomatic infection. Obtaining convalescent-phase plasma with high antibody titers to treat MERS will be challenging.published_or_final_versio
The effects of supernovae on the dynamical evolution of binary stars and star clusters
In this chapter I review the effects of supernovae explosions on the
dynamical evolution of (1) binary stars and (2) star clusters.
(1) Supernovae in binaries can drastically alter the orbit of the system,
sometimes disrupting it entirely, and are thought to be partially responsible
for `runaway' massive stars - stars in the Galaxy with large peculiar
velocities. The ejection of the lower-mass secondary component of a binary
occurs often in the event of the more massive primary star exploding as a
supernova. The orbital properties of binaries that contain massive stars mean
that the observed velocities of runaway stars (10s - 100s km s) are
consistent with this scenario.
(2) Star formation is an inherently inefficient process, and much of the
potential in young star clusters remains in the form of gas. Supernovae can in
principle expel this gas, which would drastically alter the dynamics of the
cluster by unbinding the stars from the potential. However, recent numerical
simulations, and observational evidence that gas-free clusters are observed to
be bound, suggest that the effects of supernova explosions on the dynamics of
star clusters are likely to be minimal.Comment: 16 pages, to appear in the 'Handbook of Supernovae', eds. Paul Murdin
and Athem Alsabti. This version replaces an earlier version that contained
several typo
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