The Costs of Biosecurity at the Farm Level: the Case of Finnish Broiler

In the European Union, the animal health and food safety strategy includes managing biosecurity along the entire production chain. Farm-level biosecurity provides the foundation for this. However, the farm-level costs of preventive biosecurity have rarely been assessed. Yet many risk management practices are in place constantly regardless of whether there is a disease outbreak or not. We contribute towards filling this information gap by studying the costs incurred in preventive biosecurity by the Finnish poultry farms. In a preliminary analysis, we find that the cost of biosecurity is some 3.55 cents per bird for broiler producers and 75.7 cents per bird for hatching egg producers. The results indicate that work-time devoted to biosecurity represents some 8% of total work time on broiler farms and about 5% on breeder farms.Biosecurity, on-farm costs, poultry, Livestock Production/Industries,

Measuring site fidelity and spatial segregation within animal societies

© 2017 The Authors. Methods in Ecology and Evolution published by John Wiley & Sons Ltd on behalf of British Ecological Society. Animals often display a marked tendency to return to previously visited locations that contain important resources, such as water, food, or developing brood that must be provisioned. A considerable body of work has demonstrated that this tendency is strongly expressed in ants, which exhibit fidelity to particular sites both inside and outside the nest. However, thus far many studies of this phenomena have taken the approach of reducing an animal's trajectory to a summary statistic, such as the area it covers. Using both simulations of biased random walks, and empirical trajectories from individual rock ants, Temnothorax albipennis, we demonstrate that this reductive approach suffers from an unacceptably high rate of false negatives. To overcome this, we describe a site-centric approach which, in combination with a spatially-explicit null model, allows the identification of the important sites towards which individuals exhibit statistically significant biases. Using the ant trajectories, we illustrate how the site-centric approach can be combined with social network analysis tools to detect groups of individuals whose members display similar space-use patterns. We also address the mechanistic origin of individual site fidelity; by examining the sequence of visits to each site, we detect a statistical signature associated with a self-attracting walk – a non-Markovian movement model that has been suggested as a possible mechanism for generating individual site fidelity

Reduction of the sign problem using the meron-cluster approach

The sign problem in quantum Monte Carlo calculations is analyzed using the meron-cluster solution. The concept of merons can be used to solve the sign problem for a limited class of models. Here we show that the method can be used to \textit{reduce} the sign problem in a wider class of models. We investigate how the meron solution evolves between a point in parameter space where it eliminates the sign problem and a point where it does not affect the sign problem at all. In this intermediate regime the merons can be used to reduce the sign problem. The average sign still decreases exponentially with system size and inverse temperature but with a different prefactor. The sign exhibits the slowest decrease in the vicinity of points where the meron-cluster solution eliminates the sign problem. We have used stochastic series expansion quantum Monte Carlo combined with the concept of directed loops.Comment: 8 pages, 9 figure

A Spin - 3/2 Ising Model on a Square Lattice

The spin - 3/2 Ising model on a square lattice is investigated. It is shown that this model is reducible to an eight - vertex model on a surface in the parameter space spanned by coupling constants J, K, L and M. It is shown that this model is equivalent to an exactly solvable free fermion model along two lines in the parameter space.Comment: LaTeX, 7 pages, 1 figure upon request; JETP Letters, in pres

The effect of alcohol on cervical and ocular vestibular evoked myogenic potentials in healthy volunteers

OBJECTIVE: We investigated the effect of alcohol on the cervical and ocular vestibular evoked myogenic potentials (cVEMPs and oVEMPs). As alcohol produces gaze-evoked nystagmus (GEN), we also tested the effect of nystagmus independent of alcohol by recording oVEMPs during optokinetic stimulation (OKS). METHODS: The effect of alcohol was tested in 14 subjects over multiple rounds of alcohol consumption up to a maximum breath alcohol concentration (BrAC) of 1.5‰ (mean 0.97‰). The effect of OKS was tested in 11 subjects at 5, 10 and 15deg/sec. RESULTS: oVEMP amplitude decreased from baseline to the highest BrAC level by 27% (range 5-50%, P<0.001), but there was no significant effect on oVEMP latency or cVEMP amplitude or latency. There was a significant negative effect of OKS on oVEMP amplitude (16%, P=0.006). CONCLUSIONS: We found a selective effect of alcohol on oVEMP amplitude, but no effect on the cVEMP. Vertical nystagmus elicited by OKS reduced oVEMP amplitude. SIGNIFICANCE: Alcohol selectively affects oVEMP amplitude. Despite the effects of alcohol and nystagmus, both reflexes were reliably recorded in all subjects and conditions. An absent response in a patient affected by alcohol or nystagmus indicates a vestibular deficit

Global Bethe lattice consideration of the spin-1 Ising model

The spin-1 Ising model with bilinear and biquadratic exchange interactions and single-ion crystal field is solved on the Bethe lattice using exact recursion equations. The general procedure of critical properties investigation is discussed and full set of phase diagrams are constructed for both positive and negative biquadratic couplings. In latter case we observe all remarkable features of the model, uncluding doubly-reentrant behavior and ferrimagnetic phase. A comparison with the results of other approximation schemes is done.Comment: Latex, 11 pages, 13 ps figures available upon reques

Topoisomer Differentiation of Molecular Knots by FTICR MS: Lessons from Class II Lasso Peptides

Lasso peptides constitute a class of bioactive peptides sharing a knotted structure where the C-terminal tail of the peptide is threaded through and trapped within an N-terminalmacrolactamring. The structural characterization of lasso structures and differentiation from their unthreaded topoisomers is not trivial and generally requires the use of complementary biochemical and spectroscopic methods. Here we investigated two antimicrobial peptides belonging to the class II lasso peptide family and their corresponding unthreaded topoisomers: microcin J25 (MccJ25), which is known to yield two-peptide product ions specific of the lasso structure under collisioninduced dissociation (CID), and capistruin, for which CID does not permit to unambiguously assign the lasso structure. The two pairs of topoisomers were analyzed by electrospray ionization Fourier transform ion cyclotron resonance mass spectrometry (ESI-FTICR MS) upon CID, infrared multiple photon dissociation (IRMPD), and electron capture dissociation (ECD). CID and ECDspectra clearly permitted to differentiate MccJ25 from its non-lasso topoisomer MccJ25-Icm, while for capistruin, only ECD was informative and showed different extent of hydrogen migration (formation of c\bullet/z from c/z\bullet) for the threaded and unthreaded topoisomers. The ECD spectra of the triply-charged MccJ25 and MccJ25-lcm showed a series of radical b-type product ions {\eth}b0In{\TH}. We proposed that these ions are specific of cyclic-branched peptides and result from a dual c/z\bullet and y/b dissociation, in the ring and in the tail, respectively. This work shows the potentiality of ECD for structural characterization of peptide topoisomers, as well as the effect of conformation on hydrogen migration subsequent to electron capture

The JAK inhibitor tofacitinib suppresses synovial JAK1-STAT signalling in rheumatoid arthritis.

ObjectiveTofacitinib is an oral Janus kinase (JAK) inhibitor for the treatment of rheumatoid arthritis (RA). The pathways affected by tofacitinib and the effects on gene expression in situ are unknown. Therefore, tofacitinib effects on synovial pathobiology were investigated.MethodsA randomised, double-blind, phase II serial synovial biopsy study (A3921073; NCT00976599) in patients with RA with an inadequate methotrexate response. Patients on background methotrexate received tofacitinib 10 mg twice daily or placebo for 28 days. Synovial biopsies were performed on Days -7 and 28 and analysed by immunoassay or quantitative PCR. Clinical response was determined by disease activity score and European League Against Rheumatism (EULAR) response on Day 28 in A3921073, and at Month 3 in a long-term extension study (A3921024; NCT00413699).ResultsTofacitinib exposure led to EULAR moderate to good responses (11/14 patients), while placebo was ineffective (1/14 patients) on Day 28. Tofacitinib treatment significantly reduced synovial mRNA expression of matrix metalloproteinase (MMP)-1 and MMP-3 (p&lt;0.05) and chemokines CCL2, CXCL10 and CXCL13 (p&lt;0.05). No overall changes were observed in synovial inflammation score or the presence of T cells, B cells or macrophages. Changes in synovial phosphorylation of signal transducer and activator of transcription 1 (STAT1) and STAT3 strongly correlated with 4-month clinical responses (p&lt;0.002). Tofacitinib significantly decreased plasma CXCL10 (p&lt;0.005) at Day 28 compared with placebo.ConclusionsTofacitinib reduces metalloproteinase and interferon-regulated gene expression in rheumatoid synovium, and clinical improvement correlates with reductions in STAT1 and STAT3 phosphorylation. JAK1-mediated interferon and interleukin-6 signalling likely play a key role in the synovial response.Trial registration numberNCT00976599

Localized spin ordering in Kondo lattice models

Using a non-Abelian density matrix renormalization group method we determine the phase diagram of the Kondo lattice model in one dimension, by directly measuring the magnetization of the ground-state. This allowed us to discover a second ferromagnetic phase missed in previous approaches. The phase transitions are found to be continuous. The spin-spin correlation function is studied in detail, and we determine in which regions the large and small Fermi surfaces dominate. The importance of double-exchange ordering and its competition with Kondo singlet formation is emphasized in understanding the complexity of the model.Comment: Revtex, 4 pages, 4 eps figures embedde

Ordered phase and phase transitions in the three-dimensional generalized six-state clock model

We study the three-dimensional generalized six-state clock model at values of the energy parameters, at which the system is considered to have the same behavior as the stacked triangular antiferromagnetic Ising model and the three-state antiferromagnetic Potts model. First, we investigate ordered phases by using the Monte Carlo twist method (MCTM). We confirmed the existence of an incompletely ordered phase (IOP1) at intermediate temperature, besides the completely ordered phase (COP) at low-temperature. In this intermediate phase, two neighboring states of the six-state model mix, while one of them is selected in the low temperature phase. We examine the fluctuation the mixing rate of the two states in IOP1 and clarify that the mixing rate is very stable around 1:1. The high temperature phase transition is investigated by using non-equilibrium relaxation method (NERM). We estimate the critical exponents beta=0.34(1) and nu=0.66(4). These values are consistent with the 3D-XY universality class. The low temperature phase transition is found to be of first-order by using MCTM and the finite-size-scaling analysis