10,140 research outputs found
Good Learning and Implicit Model Enumeration
MathSBML is an open-source, freely-downloadable Mathematica package that facilitates working with Systems Biology Markup Language (SBML) models. SBML is a toolneutral,computer-readable format for representing models of biochemical reaction networks, applicable to metabolic networks, cell-signaling pathways, genomic regulatory networks, and other modeling problems in systems biology that is widely supported by the systems biology community. SBML is based on XML, a standard medium for representing and transporting data that is widely supported on the internet as well as in computational biology and bioinformatics. Because SBML is tool-independent, it enables model transportability, reuse, publication and survival. In addition to MathSBML, a number of other tools that support SBML model examination and manipulation are provided on the sbml.org website, including libSBML, a C/C++ library for reading SBML models; an SBML Toolbox for MatLab; file conversion programs; an SBML model validator and visualizer; and SBML specifications and schemas. MathSBML enables SBML file import to and export from Mathematica as well as providing an API for model manipulation and simulation
Nonabelian Gauge Theories on Noncommutative Spaces
In this paper, we describe a method for obtaining the nonabelian
Seiberg-Witten map for any gauge group and to any order in theta. The equations
defining the Seiberg-Witten map are expressed using a coboundary operator, so
that they can be solved by constructing a corresponding homotopy operator. The
ambiguities, of both the gauge and covariant type, which arise in this map are
manifest in our formalism.Comment: 14 pages, latex, Talk presented at 2001: A Spacetime Odyssey -
Michigan Center for Theoretical Physics, some typos correcte
Fundamental Vibrational Transitions of HCl Detected in CRL 2136
We would like to understand the chemistry of dense clouds and their hot cores
more quantitatively by obtaining more complete knowledge of the chemical
species present in them. We have obtained high-resolution infrared absorption
spectroscopy at 3-4 um toward the bright infrared source CRL 2136. The
fundamental vibration-rotation band of HCl has been detected within a dense
cloud for the first time. The HCl is probably located in the warm compact
circumstellar envelope or disk of CRL 2136. The fractional abundance of HCl is
(4.9-8.7)e-8, indicating that approximately 20 % of the elemental chlorine is
in gaseous HCl. The kinetic temperature of the absorbing gas is 250 K, half the
value determined from infrared spectroscopy of 13CO and water. The percentage
of chlorine in HCl is approximately that expected for gas at this temperature.
The reason for the difference in temperatures between the various molecular
species is unknown.Comment: 6 pages, 3 figures, A&A in pres
Absorption Line Survey of H3+ toward the Galactic Center Sources III. Extent of the Warm and Diffuse Clouds
We present follow-up observations to those of Geballe & Oka (2010), who found
high column densities of H3+ ~100 pc off of the Galactic center (GC) on the
lines of sight to 2MASS J17432173-2951430 (J1743) and 2MASS J17470898-2829561
(J1747). The wavelength coverages on these sightlines have been extended in
order to observe two key transitions of H3+, R(3,3)l and R(2,2)l, that
constrain the temperatures and densities of the environments. The profiles of
the H3+ R(3,3)l line, which is due only to gas in the GC, closely matches the
differences between the H3+ R(1,1)l and CO line profiles, just as it does for
previously studied sightlines in the GC. Absorption in the R(2,2)l line of H3+
is present in J1747 at velocities between -60 and +100 km/s. This is the second
clear detection of this line in the interstellar medium after GCIRS 3 in the
Central Cluster. The temperature of the absorbing gas in this velocity range is
350 K, significantly warmer than in the diffuse clouds in other parts of the
Central Molecular Zone. This indicates that the absorbing gas is local to Sgr B
molecular cloud complex. The warm and diffuse gas revealed by Oka et al. (2005)
apparently extends to ~100 pc, but there is a hint that its temperature is
somewhat lower in the line of sight to J1743 than elsewhere in the GC. The
observation of H3+ toward J1747 is compared with the recent Herschel
observation of H2O+ toward Sgr B2 and their chemical relationship and
remarkably similar velocity profiles are discussed.Comment: 6 pages, 3 figures, 2 tables, Accepted for publication in
Publications of the Astronomical Society of Japa
Environmental dependence of 8um luminosity functions of galaxies at z~0.8: Comparison between RXJ1716.4+6708 and the AKARI NEP deep field
We aim to reveal environmental dependence of infrared luminosity functions
(IR LFs) of galaxies at z~0.8 using the AKARI satellite. We construct restframe
8um IR LFs in the cluster region RXJ1716.4+6708 at z=0.81, and compare them
with a blank field using the AKARI North Ecliptic Pole deep field data at the
same redshift. AKARI's wide field of view (10'x10') is suitable to investigate
wide range of galaxy environments. AKARI's 15um filter is advantageous here
since it directly probes restframe 8um at z~0.8, without relying on a large
extrapolation based on a SED fit, which was the largest uncertainty in previous
work. We have found that cluster IR LFs at restframe 8um have a factor of 2.4
smaller L^* and a steeper faint-end slope than that of the field. Confirming
this trend, we also found that faint-end slopes of the cluster LFs becomes
flatter and flatter with decreasing local galaxy density. These changes in LFs
cannot be explained by a simple infall of field galaxy population into a
cluster. Physics that can preferentially suppress IR luminous galaxies in high
density regions is required to explain the observed results.Comment: Accepted for publication in A&A AKARI special issu
Charmless decays and new physics effects in the mSUGRA model
By employing the QCD factorization approach, we calculate the new physics
contributions to the branching radios of the two-body charmless and
decays in the framework of the minimal supergravity (mSUGRA) model.
we choose three typical sets of the mSUGRA input parameters in which the Wilson
coefficient can be either SM-like (the case A and C) or has
a flipped-sign (the case B). We found numerically that (a) the SUSY
contributions are always very small for both case A and C; (b) for those
tree-dominated decays, the SUSY contributions in case B are also very small;
(c) for those QCD penguin-dominated decay modes, the SUSY contributions in case
B can be significant, and can provide an enhancement about to
the branching ratios of and decays, but a
reduction about to decays; and (d) the
large SUSY contributions in the case B may be masked by the large theoretical
errors dominated by the uncertainty from our ignorance of calculating the
annihilation contributions in the QCD factorization approach.Comment: 34 pages, 8 PS figures, this is the correct version
Study of Magnetic Excitation in Singlet-Ground-State Magnets CsFeCl and RbFeCl by Nuclear Magnetic Relaxation
The temperature dependences of spin-lattice relaxation time of
Cs in CsFeCl and Rb in RbFeCl were measured in the
temperature range between 1.5 K and 22 K, at various fields up to 7 T applied
parallel (or perpendicular) to the c-axis, and the analysis was made on the
basis of the DCEFA. The mechanism of the nuclear magnetic relaxation is
interpreted in terms of the magnetic fluctuations which are characterized by
the singlet ground state system. In the field region where the phase transition
occurs, exhibited the tendency of divergence near , and
this feature was ascribed to the transverse spin fluctuation associated with
the mode softening at the -point. It was found that the damping constant of
the soft mode is remarkably affected by the occurrence of the magnetic ordering
at lower temperature, and increases largely in the field region where the phase
transition occurs.Comment: 12 pages, 18 figures, submitted to J. Phys. Soc. Jp
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