137 research outputs found
A comparative study of Gaussian Graphical Model approaches for genomic data
The inference of networks of dependencies by Gaussian Graphical models on
high-throughput data is an open issue in modern molecular biology. In this
paper we provide a comparative study of three methods to obtain small sample
and high dimension estimates of partial correlation coefficients: the
Moore-Penrose pseudoinverse (PINV), residual correlation (RCM) and
covariance-regularized method . We first compare them on simulated
datasets and we find that PINV is less stable in terms of AUC performance when
the number of variables changes. The two regularized methods have comparable
performances but is much faster than RCM. Finally, we present the
results of an application of for the inference of a gene network
for isoprenoid biosynthesis pathways in Arabidopsis thaliana.Comment: 7 pages, 1 figure, RevTex4, version to appear in the proceedings of
1st International Workshop on Pattern Recognition, Proteomics, Structural
Biology and Bioinformatics: PR PS BB 2011, Ravenna, Italy, 13 September 201
Inhomogeneous charged pion condensation phenomenon in the NJL model with quark number and isospin chemical potentials
The properties of two-flavored massive Nambu--Jona-Lasinio model in
(1+1)-dimensional spacetime are investigated in the presence of isospin and
quark number chemical potentials. The consideration is performed in the
large- limit, where is the number of colored quarks. It is shown in
the framework of this model that charged pion condensation phenomenon of dense
quark/hadron isotopically asymmetric matter is rather a spatially inhomogeneous
than a homogeneous one.Comment: 11 pages, 8 figures; version accepted for publication in PRD. arXiv
admin note: text overlap with arXiv:1106.2928, arXiv:1102.407
Cooling of a Compact Star with a LOFF Matter Core
Specific heat and neutrino emissivity due to direct URCA processes for quark
matter in the color superconductive Larkin-Ovchinnikov-Fulde-Ferrell (LOFF)
phase of Quantum-Chromodynamics have been evaluated. The cooling rate of
simplified models of compact stars with a LOFF matter core is estimated.Comment: 3 pages, 1 figure, to appear in the proceedings of the Helmoltz
International Summer School of Theoretical Physics on Dense Matter in Heavy
Ion Collisions and Astrophysics, JINR, Dubna, Russia, 21 Aug - 1 Sep 200
Superfluid and Pseudo-Goldstone Modes in Three Flavor Crystalline Color Superconductivity
We study the bosonic excitations in the favorite cubic three flavor
crystalline LOFF phases of QCD. We calculate in the Ginzburg-Landau
approximation the masses of the eight pseudo Nambu-Goldstone Bosons (NGB)
present in the low energy theory. We also compute the decay constants of the
massless NGB Goldstones associated to superfluidity as well as those of the
eight pseudo NGB. Differently from the corresponding situation in the
Color-Flavor-Locking phase, we find that meson condensation phases are not
expected in the present scenario.Comment: 10 pages, RevTeX4 class. Section IIIA enlarged, to appear on Phys.
Rev.
A diagrammatic derivation of the meson effective masses in the neutral color-flavor-locked phase of Quantum Chromodynamics
We offer a diagrammatic derivation of the effective masses of the axial
flavor excitations in the electrical and color neutral CFL phase of QCD. In
particular we concentrate on the excitations with the quantum numbers of the
kaons: we show how their effective chemical potentials, responsible of their
Bose-Einstein condensation and found previously on the basis of pure symmetry
arguments, arise at the microscopic level by loop effects. We perform also the
numerical evaluation of the relevant loops in the whole CFL regime
, showing the existence of the enhancement of the
kaon condensation with respect to the lowest order result. Finally we discuss
the role of electrical and color neutrality in the microscopic calculation.Comment: 10 pages, 2 figures, RevTeX4 style. Version accepted for publication
on JHEP. Some minor change in the tex
Bulk viscosity in 2SC quark matter
The bulk viscosity of three-flavor color-superconducting quark matter
originating from the nonleptonic process u+s u+d is computed. It is assumed
that up and down quarks form Cooper pairs while the strange quark remains
unpaired (2SC phase). A general derivation of the rate of strangeness
production is presented, involving contributions from a multitude of different
subprocesses, including subprocesses that involve different numbers of gapped
quarks as well as creation and annihilation of particles in the condensate. The
rate is then used to compute the bulk viscosity as a function of the
temperature, for an external oscillation frequency typical of a compact star
r-mode. We find that, for temperatures far below the critical temperature T_c
for 2SC pairing, the bulk viscosity of color-superconducting quark matter is
suppressed relative to that of unpaired quark matter, but for T >~ 10^(-3) T_c
the color-superconducting quark matter has a higher bulk viscosity. This is
potentially relevant for the suppression of r-mode instabilities early in the
life of a compact star.Comment: 18 pages + appendices (28 pages total), 8 figures; v3: corrected
numerical error in the plots; 2SC bulk viscosity is now larger than unpaired
bulk viscosity in a wider temperature rang
Addressing the need for standardization of test methods for self-healing concrete: an inter-laboratory study on concrete with macrocapsules.
Development and commercialization of self-healing concrete is hampered due to a lack of standardized test methods. Six inter-laboratory testing programs are being executed by the EU COST action SARCOS, each focusing on test methods for a specific self-healing technique. This paper reports on the comparison of tests for mortar and concrete specimens with polyurethane encapsulated in glass macrocapsules. First, the pre-cracking method was analysed: mortar specimens were cracked in a three-point bending test followed by an active crack width control technique to restrain the crack width up to a predefined value, while the concrete specimens were cracked in a three-point bending setup with a displacement-controlled loading system. Microscopic measurements showed that with the application of the active control technique almost all crack widths were within a narrow predefined range. Conversely, for the concrete specimens the variation on the crack width was higher. After pre-cracking, the self-healing effect was characterized via durability tests: the mortar specimens were tested in a water permeability test and the spread of the healing agent on the crack surfaces was determined, while the concrete specimens were subjected to two capillary water absorption tests, executed with a different type of waterproofing applied on the zone around the crack. The quality of the waterproofing was found to be important, as different results were obtained in each absorption test. For the permeability test, 4 out of 6 labs obtained a comparable flow rate for the reference specimens, yet all 6 labs obtained comparable sealing efficiencies, highlighting the potential for further standardization
Reaction rates and transport in neutron stars
Understanding signals from neutron stars requires knowledge about the
transport inside the star. We review the transport properties and the
underlying reaction rates of dense hadronic and quark matter in the crust and
the core of neutron stars and point out open problems and future directions.Comment: 74 pages; commissioned for the book "Physics and Astrophysics of
Neutron Stars", NewCompStar COST Action MP1304; version 3: minor changes,
references updated, overview graphic added in the introduction, improvements
in Sec IV.A.
Strongly Correlated Quantum Fluids: Ultracold Quantum Gases, Quantum Chromodynamic Plasmas, and Holographic Duality
Strongly correlated quantum fluids are phases of matter that are
intrinsically quantum mechanical, and that do not have a simple description in
terms of weakly interacting quasi-particles. Two systems that have recently
attracted a great deal of interest are the quark-gluon plasma, a plasma of
strongly interacting quarks and gluons produced in relativistic heavy ion
collisions, and ultracold atomic Fermi gases, very dilute clouds of atomic
gases confined in optical or magnetic traps. These systems differ by more than
20 orders of magnitude in temperature, but they were shown to exhibit very
similar hydrodynamic flow. In particular, both fluids exhibit a robustly low
shear viscosity to entropy density ratio which is characteristic of quantum
fluids described by holographic duality, a mapping from strongly correlated
quantum field theories to weakly curved higher dimensional classical gravity.
This review explores the connection between these fields, and it also serves as
an introduction to the Focus Issue of New Journal of Physics on Strongly
Correlated Quantum Fluids: from Ultracold Quantum Gases to QCD Plasmas. The
presentation is made accessible to the general physics reader and includes
discussions of the latest research developments in all three areas.Comment: 138 pages, 25 figures, review associated with New Journal of Physics
special issue "Focus on Strongly Correlated Quantum Fluids: from Ultracold
Quantum Gases to QCD Plasmas"
(http://iopscience.iop.org/1367-2630/focus/Focus%20on%20Strongly%20Correlated%20Quantum%20Fluids%20-%20from%20Ultracold%20Quantum%20Gases%20to%20QCD%20Plasmas
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