Development of real-time PCR and hybridization methods for detection and identification of thermophilic Campylobacter spp. in pig faecal samples

Aims: To develop a real-time (rt) PCR for species differentiation of thermophilic Campylobacter and to develop a method for assessing co-colonization of pigs by Campylobacter spp. Methods and results: The specificity of a developed 5’nuclease rt-PCR for species-specific identification of C. jejuni, C. coli, C. lari, C. upsaliensis and of a hipO gene nucleotide probe for detection of C. jejuni by colony-blot hybridization were determined by testing a total of 75 reference strains of Campylobacter spp. and related organisms. The rt-PCR method allowed species-specific detection of Campylobacter spp. in naturally infected pig faecal samples after an enrichment step, whereas the hybridization approach enhanced the specific isolation of C. jejuni (present in minority to C. coli) from pigs. Conclusions: The rt-PCR was specific for Campylobacter jejuni, C. coli, C. lari, and C. upsaliensis and the colony-blot hybridization approach provided an effective tool for isolation of C. jejuni from pig faecal samples typically dominated by C. coli. Significance and impact of study: Species differentiation between thermophilic Campylobacter is difficult by phenotypic methods and the developed rt-PCR provides an easy and fast method for such differentiation. Detection of C. jejuni by colony hybridization may increase the isolation rate of this species from pig feces

Estimating connectivity of hard clam (Mercenaria mercenaria) and eastern oyster (Crassostrea virginica) larvae in Barnegat Bay

© The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Goodwin, J. D., Munroe, D. M., Defne, Z., Ganju, N. K., & Vasslides, J. Estimating connectivity of hard clam (Mercenaria mercenaria) and eastern oyster (Crassostrea virginica) larvae in Barnegat Bay. Journal of Marine Science and Engineering, 7(6), (2019): 167, doi:10.3390/jmse7060167.Many marine organisms have a well-known adult sessile stage. Unfortunately, our lack of knowledge regarding their larval transient stage hinders our understanding of their basic ecology and connectivity. Larvae can have swimming behavior that influences their transport within the marine environment. Understanding the larval stage provides insight into population connectivity that can help strategically identify areas for restoration. Current techniques for understanding the larval stage include modeling that combines particle attributes (e.g., larval behavior) with physical processes of water movement to contribute to our understanding of connectivity trends. This study builds on those methods by using a previously developed retention clock matrix (RCM) to illustrate time dependent connectivity of two species of shellfish between areas and over a range of larval durations. The RCM was previously used on physical parameters but we expand the concept by applying it to biology. A new metric, difference RCM (DRCM), is introduced to quantify changes in connectivity under different scenarios. Broad spatial trends were similar for all behavior types with a general south to north progression of particles. The DRCMs illustrate differences between neutral particles and those with behavior in northern regions where stratification was higher, indicating that larval behavior influenced transport. Based on these findings, particle behavior led to small differences (north to south movement) in transport patterns in areas with higher salinity gradients (the northern part of the system) compared to neutral particles. Overall, the dominant direction for particle movement was from south to north, which at times was enhanced by winds from the south. Clam and oyster restoration in the southern portion of Barnegat Bay could serve as a larval supply for populations in the north. These model results show that coupled hydrodynamic and particle tracking models have implications for fisheries management and restoration activities.This work is supported by the Barnegat Bay Partnership EPA grants CE98212311, CE98212312. We extend our deep thanks to anonymous reviewers and Lisa Lucas who provided thoughtful input that improved the manuscript. We thank Matthew Kozak and Ian Mitchell for technical advice and Elizabeth North for LTRANS guidance. Joe Caracapa and Jennifer Gius provided help running remote simulations. COAST model source code is available at https://code.usgs.gov/coawstmodel/COAWST [50]. The hydrodynamic model outoput is available at: http://geoport.whoi.edu/thredds/catalog/clay/usgs/users/zdefne/GRL/catalog.html [21] and particle tracking model outputs are available from the corresponding author upon request

Operational Theory of Homodyne Detection

We discuss a balanced homodyne detection scheme with imperfect detectors in the framework of the operational approach to quantum measurement. We show that a realistic homodyne measurement is described by a family of operational observables that depends on the experimental setup, rather than a single field quadrature operator. We find an explicit form of this family, which fully characterizes the experimental device and is independent of a specific state of the measured system. We also derive operational homodyne observables for the setup with a random phase, which has been recently applied in an ultrafast measurement of the photon statistics of a pulsed diode laser. The operational formulation directly gives the relation between the detected noise and the intrinsic quantum fluctuations of the measured field. We demonstrate this on two examples: the operational uncertainty relation for the field quadratures, and the homodyne detection of suppressed fluctuations in photon statistics.Comment: 7 pages, REVTe

Bitwise Bell inequality violations for an entangled state involving 2N ions

Following on from previous work [J. A. Larsson, Phys. Rev. A 67, 022108 (2003)], Bell inequalities based on correlations between binary digits are considered for a particular entangled state involving 2N trapped ions. These inequalities involve applying displacement operations to half of the ions and then measuring correlations between pairs of corresponding bits in the binary representations of the number of centre-of-mass phonons of N particular ions. It is shown that the state violates the inequalities and thus displays nonclassical correlations. It is also demonstrated that it violates a Bell inequality when the displacements are replaced by squeezing operations.Comment: 12 pages, 5 figures, accepted for publication in Phys. Rev.

Perfectionism, achievement motives, and attribution of success and failure in female soccer players

While some researchers have identified adaptive perfectionism as a key characteristic to achieving elite performance in sport, others see perfectionism as a maladaptive characteristic that undermines, rather than helps, athletic performance. Arguing that perfectionism in sport contains both adaptive and maladaptive facets, the present article presents a study of N 5 74 female soccer players investigating how two facets of perfectionism—perfectionistic strivings and negative reactions to imperfection (Stoeber, Otto, Pescheck, Becker, & Stoll, 2007)—are related to achievement motives and attributions of success and failure. Results show that striving for perfection was related to hope of success and self-serving attributions (internal attribution of success). Moreover, once overlap between the two facets of perfectionism was controlled for, striving for perfection was inversely related to fear of failure and self-depreciating attributions (internal attribution of failure). In contrast, negative reactions to imperfection were positively related to fear of failure and self-depreciating attributions (external attribution of success) and inversely related to self-serving attributions (internal attribution of success and external attribution of failure). It is concluded that striving for perfection in sport is associated with an adaptive pattern of positive motivational orientations and self-serving attributions of success and failure, which may help athletic performance. In contrast, negative reactions to imperfection are associated with a maladaptive pattern of negative motivational orientations and self-depreciating attributions, which is likely to undermine athletic performance. Consequently, perfectionism in sport may be adaptive in those athletes who strive for perfection, but can control their negative reactions when performance is less than perfect

Magnetic field processing to enhance critical current densities of MgB2 superconductors

Magnetic field of up to 12 T was applied during the sintering process of pure MgB2 and carbon nanotube (CNT) doped MgB2 wires. We have demonstrated that magnetic field processing results in grain refinement, homogeneity and significant enhancement in Jc(H) and Hirr. The Jc of pure MgB2 wire increased by up to a factor of 3 to 4 and CNT doped MgB2 by up to an order of magnitude in high field region respectively, compared to that of the non-field processed samples. Hirr for CNT doped sample reached 7.7 T at 20 K. Magnetic field processing reduces the resistivity in CNT doped MgB2, straightens the entangled CNT and improves the adherence between CNTs and MgB2 matrix. No crystalline alignment of MgB2 was observed. This method can be easily scalable for a continuous production and represents a new milestone in the development of MgB2 superconductors and related systems

Quantum homodyne tomography with a priori constraints

I present a novel algorithm for reconstructing the Wigner function from homodyne statistics. The proposed method, based on maximum-likelihood estimation, is capable of compensating for detection losses in a numerically stable way.Comment: 4 pages, REVTeX, 2 figure

The Co-occurrence of child and intimate partner maltreatment in the family: characteristics of the violent perpetrators

This study considers the characteristics associated with mothers and fathers who maltreat their child and each other in comparison to parents who only maltreat their child. One hundred and sixty-two parents who had allegations of child maltreatment made against them were considered. The sample consisted of 43 fathers (Paternal Family—PF) and 23 mothers (Maternal Family—MF) who perpetrated both partner and child maltreatment, together with 23 fathers (Paternal Child—PC) and 26 mothers (Maternal Child—MC) who perpetrated child maltreatment only. In addition, 2 fathers (Paternal Victim—PV) and 23 mothers (Maternal Victim—MV) were victims of intimate partner maltreatment and perpetrators of child maltreatment and 7 fathers (Paternal Non-abusive Carer—PNC) and 15 mothers (Maternal Non-abusive Carer—MNC) did not maltreat the child but lived with an individual who did. Within their family unit, 40.7% of parents perpetrated both intimate partner and child maltreatment. However, fathers were significantly more likely to maltreat both their partner and child than mothers and mothers were significantly more likely to be victims of intimate partner violence than fathers. PF fathers conducted the highest amount of physical and/or sexual child maltreatment while MC and MV mothers perpetrated the highest amount of child neglect. Few significant differences between mothers were found. PF fathers had significantly more factors associated with development of a criminogenic lifestyle than PC fathers. Marked sex differences were demonstrated with PF fathers demonstrating significantly more antisocial characteristics, less mental health problems and fewer feelings of isolation than MF mothers. MC mothers had significantly more childhood abuse, mental health problems, parenting risk factors and were significantly more likely to be biologically related to the child than PC fathers. This study suggests that violent families should be assessed and treated in a holistic manner, considering the effects of partner violence upon all family members, rather than exclusively intervening with the violent man

Potential for the psychrophilic anaerobic treatment of swine manure using a sequencing batch reactor

. 1997. Potential for the psychrophilic anaerobic treatment of swine manure using a sequencing batch reactor. Can. Agric. Eng. 39:025-034. The feasibility of psychrophilic anaerobic digestion (PAD) in intermittently fed sequencing batch reactors (SBR) was investigated during the start-up run of an ongoing laboratory study. The start-up run results indicated that PAD in SBRs was efficient in stabilizing and deodorizing swine manure slurry. The digester effluents had little odour when compared to the raw manure. Total chemical oxygen demand (COD) was reduced by 58 to 73% and soluble COD (SCOD) by 85 to 96%. Methane production varied from 0.30 to 0.66 L CH4/g volatile solids added and methane concentration in the biogas ranged from 50 to 80%. The biog<ls production rate continued to increase even when concentrations of acetic acid and ammonia nitrogen were as high as 5500 mg/L and 3700 mg/L, respectively. Keywords: anaerobic digestion, swine manure, biogas, manure treatment, psychrophilic process, anaerobic treatment. Cet article presente les resultats preliminaires du projet d'etude sur la digestion anaerobie en condition psychrophile dans un bioreacteur it operation sequentielle. Les resultats experimentaux ont demontre que cette nouvelle technologie desodorise et stabilise Ie lisier de porco Le lisier traite est presque inodore comparativement au lisier de porc brut: La demande chimique en oxygene totale a ele reduite de 58 it 73%. La demande en oxygene chimique soluble a subit une forte diminution variant de 85 it 96%. La production de methane etait de 0.30 it 0.66 litre de CH4 par gramme de solides volatiles alimentes aux bio-reacteurs. La concentration du methane dans Ie biogaz variait entre 50 et 80%. Ce procede est tres stable, il n'est pas affecte par des concentrations elevees d'acide acetique (5500 mg/l) et ammoniac (3700 mg/l)

Universal homodyne tomography with a single local oscillator

We propose a general method for measuring an arbitrary observable of a multimode electromagnetic field using homodyne detection with a single local oscillator. In this method the local oscillator scans over all possible linear combinations of the modes. The case of two modes is analyzed in detail and the feasibility of the measurement is studied on the basis of Monte-Carlo simulations. We also provide an application of this method in tomographic testing of the GHZ state.Comment: 12 pages, 5 figures (8 eps files