Stratospheric tropical warming event and its impact on the polar and tropical troposphere

Stratosphere–troposphere coupling is investigated in relation to middle atmospheric subtropical jet (MASTJ) variations in boreal winter. An exceptional strengthening of the MASTJ occurred in association with a sudden equatorward shift of the stratospheric polar night jet (PNJ) in early December 2011. This abrupt transformation of the MASTJ and PNJ had no apparent relation to the upward propagation of planetary waves from the troposphere. The impact of this stratospheric event penetrated into the troposphere in two regions: in the northern polar region and the tropics. Due to the strong MASTJ, planetary waves at higher latitudes were deflected and trapped in the northern polar region. Trapping of the planetary waves resulted in amplification of zonal wave number 1 component, which appeared in the troposphere as the development of a trough over the Atlantic sector and a ridge over the Eurasian sector. A strong MASTJ also suppressed the equatorward propagation of planetary waves, which resulted in weaker tropical stratospheric upwelling and produced anomalous warming in the tropical stratosphere. In the tropical tropopause layer (TTL), however, sublimation of ice clouds kept the temperature change minor. In the troposphere, an abrupt termination of a Madden–Julian Oscillation (MJO) event occurred following the static stability increase in the TTL. This termination suggests that the stratospheric event affected the convective episode in the troposphere

Deterministic prediction of stratospheric sudden warming events in the Global/Regional Integrated Model system (GRIMs)

The boreal-winter stratospheric sudden warming (SSW) events and their prediction skills by an operational numerical weather prediction model are examined by applying the Global/Regional Integrated Model system (GRIMs) for 18 SSW events from 1980–2012. Based on the mean squared skill score of the 10-hPa geopotential height field, which considers the SSW spatial structure, most SSW events are predicted with a maximum forecast lead time of approximately 15 days. The vortex-displacement SSW events are slightly better predicted than the vortex-split SSW events, and the predictions are improved during El Niño or easterly quasi-biennial oscillation winters. However, the skill difference in vortex morphology and background state is statistically insignificant. The decomposition of model errors into zonal-mean and eddy errors reveals that the model errors mostly result from eddy components. In particular, eddy-amplitude errors, which originate from a misrepresentation of the planetary-scale wave amplitude (i.e., polar vortex strength), play an important role in determining the SSW prediction skill with a non-negligible contribution from eddy-phase errors. These errors are mostly caused by the misdetection of short-term wave activities immediately before the SSW onset. Furthermore, an improved SSW prediction through well-represented planetary-scale wave activities is related to an improved prediction in the troposphere on time scales of 10 days and longer. This result confirms that better representation of the stratosphere could lead to improved subseasonal- to-seasonal predictions in the northern extratropics

Diverse two-cysteine photocycles in phytochromes and cyanobacteriochromes

Phytochromes are well-known as photoactive red- and near IR-absorbing chromoproteins with cysteine-linked linear tetrapyrrole (bilin) prosthetic groups. Phytochrome photoswitching regulates adaptive responses to light in both photosynthetic and nonphotosynthetic organisms. Exclusively found in cyanobacteria, the related cyanobacteriochrome (CBCR) sensors extend the photosensory range of the phytochrome superfamily to shorter wavelengths of visible light. Blue/green light sensing by a well-studied subfamily of CBCRs proceeds via a photolabile thioether linkage to a second cysteine fully conserved in this subfamily. In the present study, we show that dual-cysteine photosensors have repeatedly evolved in cyanobacteria via insertion of a second cysteine at different positions within the bilin-binding GAF domain (cGMP-specific phosphodiesterases, cyanobacterial adenylate cyclases, and formate hydrogen lyase transcription activator FhlA) shared by CBCRs and phytochromes. Such sensors exhibit a diverse range of photocycles, yet all share ground-state absorbance of near-UV to blue light and a common mechanism of light perception: reversible photoisomerization of the bilin 15,16 double bond. Using site-directed mutagenesis, chemical modification and spectroscopy to characterize novel dual-cysteine photosensors from the cyanobacterium Nostoc punctiforme ATCC 29133, we establish that this spectral diversity can be tuned by varying the light-dependent stability of the second thioether linkage. We also show that such behavior can be engineered into the conventional phytochrome Cph1 from Synechocystis sp. PCC6803. Dual-cysteine photosensors thus allow the phytochrome superfamily in cyanobacteria to sense the full solar spectrum at the earth surface from near infrared to near ultraviolet