Mapping of mutants resistant to p-fluorophenylalanine in diploid Aspergillus nidulans, lethal in haploids

In a previous paper (Babudri and Morpurgo 1990 Curr. Genet. 17:519-522) we described a new class of para-fluorophenylalanine (FPA) resistant mutants in Aspergillus nidulans. These mutants were obtained by plating UV irradiated diploid conidia on minimal medium (MM) supplemented with FPA (0.188 mg/ml)

Nanometer-spaced platinum electrodes with calibrated separation

We have fabricated pairs of platinum electrodes with separation between 20 and 3.5 nm. Our technique combines electron beam lithography and chemical electrodeposition. We show that the measurement of the conductance between the two electrodes through the electrolyte provides an accurate and reproducible way to control their separation. We have tested the robustness of the electrodes by applying large voltages across them and by using them to measure the transport properties of Au nano-clusters. Our results show that the technique reliably produces metallic electrodes with a separation that bridges the minimum scale accessible by electron beam lithography with the atomic scale.Comment: 4 pages, 4 figure

Marginal topological properties of graphene: a comparison with topological insulators

The electronic structures of graphene systems and topological insulators have closely-related features, such as quantized Berry phase and zero-energy edge states. The reason for these analogies is that in both systems there are two relevant orbital bands, which generate the pseudo-spin degree of freedom, and, less obviously, there is a correspondence between the valley degree of freedom in graphene and electron spin in topological insulators. Despite the similarities, there are also several important distinctions, both for the bulk topological properties and for their implications for the edge states -- primarily due to the fundamental difference between valley and spin. In view of their peculiar band structure features, gapped graphene systems should be properly characterized as marginal topological insulators, distinct from either the trivial insulators or the true topological insulators.Comment: This manuscript will be published on the Proceedings of the 2010 Nobel Symposium on Graphene and Quantum Matte

Aharonov-Bohm effect and broken valley-degeneracy in graphene rings

We analyze theoretically the electronic properties of Aharonov-Bohm rings made of graphene. We show that the combined effect of the ring confinement and applied magnetic flux offers a controllable way to lift the orbital degeneracy originating from the two valleys, even in the absence of intervalley scattering. The phenomenon has observable consequences on the persistent current circulating around the closed graphene ring, as well as on the ring conductance. We explicitly confirm this prediction analytically for a circular ring with a smooth boundary modelled by a space-dependent mass term in the Dirac equation. This model describes rings with zero or weak intervalley scattering so that the valley isospin is a good quantum number. The tunable breaking of the valley degeneracy by the flux allows for the controlled manipulation of valley isospins. We compare our analytical model to another type of ring with strong intervalley scattering. For the latter case, we study a ring of hexagonal form with lattice-terminated zigzag edges numerically. We find for the hexagonal ring that the orbital degeneracy can still be controlled via the flux, similar to the ring with the mass confinement.Comment: 7 pages, 7 figures, replaced with considerably extended new versio

Current saturation and Coulomb interactions in organic single-crystal transistors

Electronic transport through rubrene single-crystal field effect transistors (FETs) is investigated experimentally in the high carrier density regime (n ~ 0.1 carrier/molecule). In this regime, we find that the current does not increase linearly with the density of charge carriers, and tends to saturate. At the same time, the activation energy for transport unexpectedly increases with increasing n. We perform a theoretical analysis in terms of a well-defined microscopic model for interacting Frohlich polarons, that quantitatively accounts for our experimental observations. This work is particularly significant for our understanding of electronic transport through organic FETs.Comment: Extended version with 1 additional figure and an appendix explaining the consistency of the theoretical calculatio

Quantitative analysis of electronic transport through weakly-coupled metal/organic interfaces

Using single-crystal transistors, we have performed a systematic experimental study of electronic transport through oxidized copper/rubrene interfaces as a function of temperature and bias. We find that the measurements can be reproduced quantitatively in terms of the thermionic emission theory for Schottky diodes, if the effect of the bias-induced barrier lowering is included. Our analysis emphasizes the role of the coupling between metal and molecules, which in our devices is weak due to the presence of an oxide layer at the surface of the copper electrodes.Comment: 4 pages, 3 figure

Inferring biochemical reaction pathways: the case of the gemcitabine pharmacokinetics.

Background The representation of a biochemical system as a network is the precursor of any mathematical model of the processes driving the dynamics of that system. Pharmacokinetics uses mathematical models to describe the interactions between drug, and drug metabolites and targets and through the simulation of these models predicts drug levels and/or dynamic behaviors of drug entities in the body. Therefore, the development of computational techniques for inferring the interaction network of the drug entities and its kinetic parameters from observational data is raising great interest in the scientic community of pharmacologists. In fact, the network inference is a set of mathematical procedures deducing the structure of a model from the experimental data associated to the nodes of the network of interactions. In this paper, we deal with the inference of a pharmacokinetic network from the concentrations of the drug and its metabolites observed at discrete time points. Results The method of network inference presented in this paper is inspired by the theory of time-lagged correlation inference with regard to the deduction of the interaction network, and on a maximum likelihood approach with regard to the estimation of the kinetic parameters of the network. Both network inference and parameter estimation have been designed specically to identify systems of biotransformations, at the biochemical level, from noisy time-resolved experimental data. We use our inference method to deduce the metabolic pathway of the gemcitabine. The inputs to our inference algorithm are the experimental time series of the concentration of gemcitabine and its metabolites. The output is the set of reactions of the metabolic network of the gemcitabine. Conclusions Time-lagged correlation based inference pairs up to a probabilistic model of parameter inference from metabolites time series allows the identication of the microscopic pharmacokinetics and pharmacodynamics of a drug with a minimal a priori knowledge. In fact, the inference model presented in this paper is completely unsupervised. It takes as input the time series of the concetrations of the parent drug and its metabolites. The method, applied to the case study of the gemcitabine pharmacokinetics, shows good accuracy and sensitivit

Shot Noise in Ballistic Graphene

We have investigated shot noise in graphene field effect devices in the temperature range of 4.2--30 K at low frequency ($f$ = 600--850 MHz). We find that for our graphene samples with large width over length ratio $W/L$, the Fano factor $\mathfrak{F}$ reaches a maximum $\mathfrak{F} \sim$ 1/3 at the Dirac point and that it decreases strongly with increasing charge density. For smaller $W/L$, the Fano factor at Dirac point is significantly lower. Our results are in good agreement with the theory describing that transport at the Dirac point in clean graphene arises from evanescent electronic states.Comment: Phys. Rev. Lett. 100, 196802 (2008

Reflectionless tunneling in ballistic normal-metal--superconductor junctions

We investigate the phenomenon of reflectionless tunneling in ballistic normal-metal--superconductor (NS) structures, using a semiclassical formalism. It is shown that applied magnetic field and superconducting phase difference both impair the constructive interference leading to this effect, but in a qualitatively different way. This is manifested both in the conductance and in the shot noise properties of the system considered. Unlike diffusive systems, the features of the conductance are sharp, and enable fine spatial control of the current, as well as single channel manipulations. We discuss the possibility of conducting experiments in ballistic semiconductor-superconductor structures with smooth interfaces and some of the phenomena, specific to such structures, that could be measured. A general criterion for the barrier at NS interfaces, though large, to be effectively transparent to pair current is obtained.Comment: published versio