Rhamphicarpa fistulosa, a widespread facultative hemi-parasitic weed, threatening rice production in Africa

Rhamphicarpa fistulosa is a facultative hemi-parasitic plant of the Orobanchaceae family, adapted to wet soils. Apart from tropical Australia, it is only found in sub-Saharan Africa, where it is considered a minor weed in cereal crops such as rice. Due to this status, the species has received only sporadic attention. Recent field observations and encounters with rice farmers in several African countries showed that R. fistulosa is, however, a more serious and increasing production constraint than previously thought. Results from a systematic literature review and a global herbarium study support this. The species has a broad distribution over Africa (at least 35 countries from Madagascar to Senegal and from Sudan to South Africa) and a wide range in altitude (0–2150 m a.s.l.) and environment (waterlogged swamps to moist free-draining uplands). Rhamphicarpa fistulosa is relatively independent and persistent because of the presumably wide host range, the facultative nature of its parasitism and its prolific seed (estimated 100 000 seeds m−2 under moderate infestation levels). Finally, R. fistulosa causes severe yield losses (average 60%) and high regional annual economic losses (estimated US $175 million), while effective control options are scant and awareness of the species among important R&D stakeholders is almost absent. An integrated approach is advocated to assist the rice sector to reduce current R. fistulosa-inflicted losses and to prevent further spread of the species into new areas

A molecular phylogeny and classification of the largely succulent and mainly African Euphorbia subg. Athymalus (Euphorbiaceae)

Euphorbia subg. Athymalus consists of approximately 150 species and is one of the four main lineages that comprise the species–rich genus Euphorbia. Most species in the subgenus are stem succulents with greatly reduced leaves, but there are also leafy herbs, shrubs, trees and geophytes. The subgenus is restricted to arid regions of the Old World. Most species are found in sub–Saharan Africa, with one in Macaronesia and adjacent parts of western Africa, a few in the Arabian Peninsula (one of which extends into Iran) and one native to Madagascar. Twenty–three species are endemic to the northeastern Horn of Africa (SE Ethiopia, Socotra, Somalia), while 72 species are restricted to southern Africa (including Botswana, Lesotho, Namibia, South Africa and Swaziland). Sixty of those are endemic to South Africa alone, where they are particularly associated with the semi–arid west and south of the country in the Greater Cape Floristic Region and the Nama Karoo Region. We sampled 88 species and analyzed data from the nuclear ribosomal ITS and plastid ndhF regions. Analyses of the separate and combined datasets produced phylogenies that confirm the monophyly of E. subg. Athymalus and the placement of E. antso from Madagascar as sister to the rest of the subgenus. Our analyses also show that the subgenus consists of a grade of early–diverging lineages that are relatively poor in species and that the major radiation of succulent species in southern Africa forms a highly supported clade (E. sect. Anthacanthae). Species–level relationships within this southern African clade, however, remain largely unresolved. Our phylogenetic hypotheses allow us to propose a new classification for E. subg. Athymalus where seven sections are recognized, two of which are newly described. The large southern African E. sect. Anthacanthae is further divided into five subsections, and four series are recognized in E. subsect. Florispinae.Peer Reviewedhttps://deepblue.lib.umich.edu/bitstream/2027.42/147157/1/tax6269.pdfhttps://deepblue.lib.umich.edu/bitstream/2027.42/147157/2/tax6269-sup-001-pdf.pd

Molecular phylogenetics and classification of Euphorbia subgenus Chamaesyce (Euphorbiaceae)

Euphorbia subg. Chamaesyce contains around 600 species and includes the largest New World radiation within the Old World–centered genus Euphorbia. It is one of the few plant lineages to include members with C3, C4 and CAM photosynthesis, showing multiple adaptations to warm and dry habitats. The subgenus includes North American–centered groups that were previously treated at various taxonomic ranks under the names of “Agaloma,,, “Poinsettia”, and “Chamaesyce”. Here we provide a well–resolved phylogeny of Euphorbia subg. Chamaesyce using nuclear ribosomal ITS and chloroplast ndhF sequences, with substantially increased taxon sampling compared to previous studies. Based on the phylogeny, we discuss the Old World origin of the subgenus, the evolution of cyathial morphology and growth forms, and then provide a formal sectional classification, with descriptions and species lists for each section or subsection we recognize.Peer Reviewedhttps://deepblue.lib.umich.edu/bitstream/2027.42/146846/1/tax614005.pd

Phylogenetics, morphological evolution, and classification of Euphorbia subgenus Euphorbia

Euphorbia subg. Euphorbia is the largest and most diverse of four recently recognized subgenera within Euphorbia and is distributed across the tropics and subtropics. Relationships within this group have been difficult to discern due mainly to homoplasious morphological characters and inadequate taxon sampling in previous phylogenetic studies. Here we present a phylogenetic analysis of E. subg. Euphorbia, using one nuclear and two plastid regions, for the most complete sampling of molecular sequence data to date. We assign 661 species to the subgenus and show that it is comprised of four highly supported clades, including a single New World clade and multiple independent lineages on Madagascar. Using this phylogenetic framework we discuss patterns of homoplasy in morphological evolution and general patterns of biogeography. Finally, we present a new sectional classification of E. subg. Euphorbia comprising 21 sections, nine of them newly described here.Peer Reviewedhttps://deepblue.lib.umich.edu/bitstream/2027.42/147178/1/tax6225-sup-003-pdf.pdfhttps://deepblue.lib.umich.edu/bitstream/2027.42/147178/2/tax6225.pd

A worldwide molecular phylogeny and classification of the leafy spurges, Euphorbia subgenus Esula (Euphorbiaceae)

The leafy spurges, Euphorbia subg. Esula, make up one of four main lineages in Euphorbia. The subgenus comprises about 480 species, most of which are annual or perennial herbs, but with a small number of dendroid shrubs and nearly leafless, pencilâ stemmed succulents as well. The subgenus constitutes the primary northern temperate radiation in Euphorbia. While the subgenus is most diverse from central Asia to the Mediterranean region, members of the group also occur in Africa, in the Indoâ Pacific region, and in the New World. We have assembled the largest worldwide sampling of the group to date (273 spp.), representing most of the taxonomic and geographic breadth of the subgenus. We performed phylogenetic analyses of sequence data from the nuclear ribosomal ITS and plastid ndhF regions. Our individual and combined analyses produced wellâ resolved phylogenies that confirm many of the previously recognized clades and also establish a number of novel groupings and placements of previously enigmatic species. Euphorbia subg. Esula has a clear Eurasian center of diversity, and we provide evidence for four independent arrivals to the New World and three separate colonizations of tropical and southern Africa. One of the latter groups further extends to Madagascar and New Zealand, and to more isolated islands such as Réunion and Samoa. Our results confirm that the dendroid shrub and stemâ succulent growth forms are derived conditions in E. subg. Esula. Stemâ succulents arose twice in the subgenus and dendroid shrubs three times. Based on the molecular phylogeny, we propose a new classification for E. subg. Esula that recognizes 21 sections (four of them newly described and two elevated from subsectional rank), and we place over 95% of the accepted species in the subgenus into this new classification.Peer Reviewedhttps://deepblue.lib.umich.edu/bitstream/2027.42/146962/1/tax6221.pdfhttps://deepblue.lib.umich.edu/bitstream/2027.42/146962/2/tax6221-sup-004-pdf.pd

A Clearing Protocol for Whole Tissues: An Example Using Haustoria of Orobanchaceae

Premise of the study: Due to lack of success in clearing whole tissues using only classical clearing techniques (e.g., Heir's 4 ½ solution, KOH, NaOH, lactic acid saturated with chloral hydrate), and because tissue degradation is often a result of harsh clearing agents (e.g., KOH, NaOH), a novel combined treatment was sought to improve the removal of obscuring tannins from intact haustoria. Methods and Results: Stockwell's bleach proved to be useful in removing tannins from haustoria, usually within 3 d (up to 10 d), rendering them opaque to (rarely) translucent. After bleaching, haustoria were successfully cleared in 1–3 d in a solution of lactic acid saturated with chloral hydrate at 42°C Conclusions: The two-step clearing protocol reported here will now facilitate structural studies on haustoria, such as those examining the presence and distribution of callose, and three-dimensional reconstmction using confocal microscopy. Tissues in this study did not suffer from the degradation in quality observed using harsher treatments. This protocol should be useful for other difficult-to-clear tissues that are unable to be cleared using classical protocols alone

Phylogenetics and the evolution of major structural characters in the giant genus Euphorbia L. (Euphorbiaceae)

Euphorbia is among the largest genera of angiosperms, with about 2000 species that are renowned for their remarkably diverse growth forms. To clarify phylogenetic relationships in the genus, we used maximum likelihood, Bayesian, and parsimony analyses of DNA sequence data from 10 markers representing all three plant genomes, averaging more than 16. kbp for each accession. Taxon sampling included 176 representatives from Euphorbioideae (including 161 of Euphorbia). Analyses of these data robustly resolve a backbone topology of four major, subgeneric clades- Esula, Rhizanthium, Euphorbia, and Chamaesyce-that are successively sister lineages. Ancestral state reconstructions of six reproductive and growth form characters indicate that the earliest Euphorbia species were likely woody, non-succulent plants with helically arranged leaves and 5-glanded cyathia in terminal inflorescences. The highly modified growth forms and reproductive features in Euphorbia have independent origins within the subgeneric clades. Examples of extreme parallelism in trait evolution include at least 14 origins of xeromorphic growth forms and at least 13 origins of seed caruncles. The evolution of growth form and inflorescence position are significantly correlated, and a pathway of evolutionary transitions is supported that has implications for the evolution of Euphorbia xerophytes of large stature. Such xerophytes total more than 400 species and are dominants of vegetation types throughout much of arid Africa and Madagascar. © 2012.Support for this study came from a National Science Foundation PBI Grant (DEB 0616533) and the Smithsonian Institution.Peer Reviewe

A worldwide molecular phylogeny and classification of the leafy spurges, Euphorbia subgenus Esula (Euphorbiaceae)

The leafy spurges, Euphorbia subg. Esula, make up one of four main lineages in Euphorbia. The subgenus comprises about 480 species, most of which are annual or perennial herbs, but with a small number of dendroid shrubs and nearly leafless, pencil-stemmed succulents as well. The subgenus constitutes the primary northern temperate radiation in Euphorbia. While the subgenus is most diverse from central Asia to the Mediterranean region, members of the group also occur in Africa, in the Indo-Pacific region, and in the New World. We have assembled the largest worldwide sampling of the group to date (273 spp.), representing most of the taxonomic and geographic breadth of the subgenus. We performed phylogenetic analyses of sequence data from the nuclear ribosomal ITS and plastid ndhF regions. Our individual and combined analyses produced well-resolved phylogenies that confirm many of the previously recognized clades and also establish a number of novel groupings and placements of previously enigmatic species. Euphorbia subg. Esula has a clear Eurasian center of diversity, and we provide evidence for four independent arrivals to the New World and three separate colonizations of tropical and southern Africa. One of the latter groups further extends to Madagascar and New Zealand, and to more isolated islands such as Réunion and Samoa. Our results confirm that the dendroid shrub and stem-succulent growth forms are derived conditions in E. subg. Esula. Stem-succulents arose twice in the subgenus and dendroid shrubs three times. Based on the molecular phylogeny, we propose a new classification for E. subg. Esula that recognizes 21 sections (four of them newly described and two elevated from subsectional rank), and we place over 95% of the accepted species in the subgenus into this new classification.Funding was made available by the U.S. National Science Foundation through a Planetary Biodiversity Inventory Grant (DEB-0616533) to P.E. Berry, by the Spanish Ministry of Education and Science through project CGL2009-13322-C03-03 to L. Barres and J. Molero, and by the Russian Foundation for Basic Research through project 10-04-00290-а to D. Geltman and A. Kryukov.Peer reviewe