Understanding the genetic relationships between Indonesian bambara groundnut landraces and investigating their origins

A total of 170 bambara groundnut (Vigna subterranea) accessions were evaluated using both simple sequence repeat (SSR) and single nucleotide polymorphism (SNP) markers generated using genotyping-bysequencing (GbS), of which 56 accessions were collected from West and East Java. Principal coordinate analysis (PCoA), population structure, and cluster analysis suggest that the East Java accessions could be a result of the introduction of selected West Java accessions. In addition, the current Indonesian accessions were likely introduced from Southern Africa, which would have produced a very marked founding effect such that these accessions present only a fraction of the genetic variability that exists within this species

Understanding the genetic relationships between Indonesian bambara groundnut landraces and investigating their origins

A total of 170 bambara groundnut (Vigna subterranea) accessions were evaluated using both simple sequence repeat (SSR) and single nucleotide polymorphism (SNP) markers generated using genotyping-by- sequencing (GbS), of which 56 accessions were collected from West and East Java. Principal coordinate analysis (PCoA), population structure, and cluster analysis suggest that the East Java accessions could be a result of the introduction of selected West Java accessions. In addition, the current Indonesian accessions were likely intro- duced from Southern Africa, which would have produced a very marked founding effect such that these accessions present only a fraction of the genetic variability that exists within this species. Key words: bambara groundnut, microsatellite, marker, SNP, genetic relationship, population structure

Genetic diversity in terapy bean (Phaseolus acutifolius) landraces grown in Botswana

A field experiment was conducted at Department of Agricultural Research in Sebele in the 2012 to 2013 season using nine accessions that were sourced from the National Plant Genetic Resource Centre (NPGRC), Gaborone, Botswana. Multivariate statistical procedures such as clusters and principal component analysis were used on 15 selected characters to assess agro-morphological variability among tepary bean landraces collected in Botswana. Few characters were statistically significant which suggest lower genetic diversity among the Botswana tepary beans. The first three PCA accounted for 77.12% of accumulated variation. Traits which revealed significant contribution to variation among accessions were number of leaves, plant spread, pod width, 100 seed weight and seeds per pod. The dendrogram results also showed that these characters contributed significantly to the grouping of accessions into three clusters. Three accessions GK011, MTS (Motsumi) and GK012 were separated from the rest of the accessions. However, GK012 and MTS (Motsumi) with highest number of valuable traits are recommended for plant breeders to use as parents in future breeding programs