Biological functions of the RNA components of red clover necrotic mosaic virus

Imperial Users onl

Wind noise from A-pillar and side view mirror of a realistic generic car model, DriAver

Interior noise of a production car is a total contribution mainly from engine, tyres and aerodynamics. At high speed, wind noise can dominate the total interior noise. Wind noise is associated with the unsteadiness of the flow. For most production cars, A-pillar and side view mirror are the regions where the highly separated and turbulent flows are observed. This study quantifies the wind noise contribution from A-pillar and side view mirror with respect to the interior noise of a generic realistic model, DrivAer. The noise sources are obtained numerically from the flow-structure interactions based on the unsteady Reynolds averaged Navier stokes (URANS) while the noise propagation is estimated using Curle's equation of Lighthill acoustic analogy. The sound pressure frequency spectrum of the interior noise is obtained by considering the sound transmission loss from the side glass by using the mass law for transmission loss. The study found that the noise from the A-pillar is higher than the noise from the side view mirror in the whole frequency range. Near the end of the A-pillar component contributes the highest radiated noise level with up to 20 dB louder than that at the front part of the A-pillar

A GIS-based model to analyze the spatial and temporal development of oil palm land use in Kuala Langat district, Malaysia

In Malaysia, areas under oil palm plantations have increased dramatically since the early twentieth century and have resulted in multiple conversions of land change. This paper presents a spatial and temporal model for simulation of oil palm expansion in the Kuala Langat district, Malaysia. The model is an integration of cellular automata (CA), multi-criteria evaluation (MCE), and Markov chain (MC) analysis while MCE provides transition rules of CA iterations and MC analysis assigns a transition probability to each single pixel at the time steps. Evaluation criteria consist of constraints and nine suitability factors indicating environmental and socio-economic issues of oil palm development. In the first simulation, changes of six land-cover classes were projected to the year 2008 based on transitions between 1997 and 2002. Two measures of quantity disagreement and allocation disagreement were adopted to validate model outcome. The simulation of land-cover change of the year 2020 was done based on the transition observed between 1997 and 2002 regarding the satisfactory agreement of the projection and the reference data at the first simulation. The results, based on five landscape metrics, indicated continuous spatial patterns of oil palm plantations but more fragmented spatial patterns of other land classes by the year 2020

Synthesis and biological evaluation of novel cYY analogues targeting Mycobacterium tuberculosis CYP121A1

The rise in multidrug resistant (MDR) cases of tuberculosis (TB) has led to the need for the development of TB drugs with different mechanisms of action. The genome sequence of Mycobacterium tuberculosis (Mtb) revealed twenty different genes coding for cytochrome P450s. CYP121A1 catalyzes a C-C crosslinking reaction of dicyclotyrosine (cYY) producing mycocyclosin and current research suggests that either mycocyclosin is essential or the overproduction of cYY is toxic to Mtb. A series of 1,4-dibenzyl-2-imidazol-1-yl-methylpiperazine derivatives were designed and synthesised as cYY mimics. The derivatives substituted in the 4-position of the phenyl rings with halides or alkyl group showed promising antimycobacterial activity (MIC 6.25 μg/mL), with the more lipophilic branched alkyl derivatives displaying optimal binding affinity with CYP121A1 (iPr KD = 1.6 μM; tBu KD = 1.2 μM). Computational studies revealed two possible binding modes within the CYP121A1 active site both of which would effectively block cYY from binding

Healthy Firms: Constraints to Growth among Private Health Sector Facilities in Ghana and Kenya

Background: Health outcomes in developing countries continue to lag the developed world, and many countries are not on target to meet the Millennium Development Goals. The private health sector provides much of the care in many developing countries (e.g., approximately 50 percent in Sub-Saharan Africa), but private providers are often poorly integrated into the health system. Efforts to improve health systems performance will need to include the private sector and increase its contributions to national health goals. However, the literature on constraints private health care providers face is limited. Methodology/Principal Findings: We analyze data from a survey of private health facilities in Kenya and Ghana to evaluate growth constraints facing private providers. A significant portion of facilities (Ghana: 62 percent; Kenya: 40 percent) report limited access to finance as the most significant barrier they face; only a small minority of facilities report using formal credit institutions to finance day to day operations (Ghana: 6 percent; Kenya: 11 percent). Other important barriers include corruption, crime, limited demand for goods and services, and poor public infrastructure. Most facilities have paper-based rather than electronic systems for patient records (Ghana: 30 percent; Kenya: 22 percent), accounting (Ghana: 45 percent; Kenya: 27 percent), and inventory control (Ghana: 41 percent; Kenya: 24 percent). A majority of clinics in both countries report undertaking activities to improve provider skills and to monitor the level and quality of care they provide. However, only a minority of pharmacies report undertaking such activities

Predicting the effects of urban development on land transition and spatial patterns of land use in western Peninsular Malaysia

Analyzing the effects of urban development on dynamic and spatial patterns of land use is vital to establish more efficient land management policies. However, in Malaysia, such effects are usually explained without quantitative metrics. This research quantified the future impact of urban expansion on the dynamic of land use by developing the area-independent dynamic metric. The metric was calculated based on summarizing the cross tabulation matrices of change in an urbanizing area at west coast of Peninsular Malaysia. Another two land use measures involving vulnerability to gain and vulnerability to loss were used to evaluate tendency of land classes to transition. The effects of urban development on spatial patterns of land use were quantified using two landscape metrics involving the Edge Density (ED) and Area-Weighted Mean Patch Fractal Dimension (AWMPFD). Analyses were carried out on a set of spatial land use data including observed 1997, 2002, and 2008, as well as a simulated near future land change for the year 2020 under a spatio-temporal land use model. Results showed that urban development practices would influence the dynamic of land transition in the near future. Urban growth would experience a fast-growing dynamic and high vulnerability to gain than loss while the dynamic and vulnerability of forest/wetland covers would decrease in terms of loss. Moreover, agriculture practices tend to be hindered by further urban development in the coming years. Another important finding was that urban development process would influence the spatial patterns of land use in the near future

The Risk of Recurrence in Breast Cancer Patients Treated with Tamoxifen: Polymorphisms of CYP2D6 and ABCB1

CYP2D6 plays a major role in the metabolism of tamoxifen, and polymorphism of Pglycoprotein has been associated with resistance of many drug therapies. This study investigates the clinical impact of genetic variants of CYP2D6 and ABCB1 in breast cancer patients treated with tamoxifen. Blood samples from 95 breast cancer patients treated with tamoxifen were collected and genotyped for CYP2D6 and ABCB1 variants using allele-specific PCR method. Recurrence risks were calculated using Kaplan–Meier analysis and compared using the log-rank test. Patients carrying CYP2D6*10/*10 and heterozygous null allele (IM) showed higher risks of developing recurrence and metastasis (OR 13.14; 95% CI 1.57–109.94; P=0.004) than patients with CYP2D6*1/*1 and *1/*10 genotypes. Patients with homozygous CC genotypes of ABCB1 C3435T showed a shorter time to recurrence. Patients who were CYP2D6 IM and homozygous CC genotype of C3435T have statistically significant higher risks of recurrence (P=0.002). Similarly, median time to recurrence in these patients was only 12 months (95% CI=0.79–23.2) compared to those without this combination which was 48 months (95% CI=14.7–81.2). Patients with CYP2D6 IM and homozygous CC genotype of ABCB1 C3435T have shorter times to recurrence. The results confirmed the findings of previous studies and support FDA recommendation to perform pre-genotyping in patients before the choice of therapy is determined in breast cancer patients

Exosomal miR-940 maintains SRC-mediated oncogenic activity in cancer cells: a possible role for exosomal disposal of tumor suppressor miRNAs

Exosomes have emerged as important mediators of diverse biological functions including tumor suppression, tumor progression, invasion, immune escape and cell-to-cell communication, through the release of molecules such as mRNAs, miRNAs, and proteins. Here, we identified differentially expressed exosomal miRNAs between normal epithelial ovarian cell line and both resistant and sensitive ovarian cancer (OC) cell lines. We found miR-940 as abundant in exosomes from SKOV3-IP1, HeyA8, and HeyA8-MDR cells. The high expression of miR-940 is associated with better survival in patients with ovarian serous cystadenocarcinoma. Ectopic expression of miR-940 inhibited proliferation, colony formation, invasion, and migration and triggered G0/G1 cell cycle arrest and apoptosis in OC cells. Overexpression of miR-940 also inhibited tumor cell growth in vivo. We showed that proto-oncogene tyrosine-protein kinase (SRC) is directly targeted by miR-940 and that miR-940 inhibited SRC expression at mRNA and protein levels. Following this inhibition, the expression of proteins downstream of SRC, such as FAK, paxillin and Akt was also reduced. Collectively, our results suggest that OC cells secrete the tumor-suppressive miR-940 into the extracellular environment via exosomes, to maintain their invasiveness and tumorigenic phenotype

Low metabolic activity of biofilm formed by Enterococcus faecalis isolated from healthy humans and wild mallards (Anas platyrhynchos)

It is widely known that Enterococcus faecalis virulence is related to its biofilm formation. Although Enterococci are common commensal organisms of the gastrointestinal tract, the difference between commensal and pathogen strains remain unclear. In this study, we compare the biochemical profile of the biofilms formed by two groups of medical and two groups of commensal strains. The medical strains were isolated as pathogens from infections of urinary tract and other infections (wounds, pus and bedsores), and the commensal strains were taken from faeces of healthy volunteers and faeces of wild mallards (Anas platyrhynchos) living in an urban environment. The properties of biofilms formed by medical and commensal strains differed significantly. Commensal strains showed lower metabolic activity and glucose uptake and higher biofilm biomass than the medical ones. Consistent with glucose uptake experiments, we found that the glucose dehydrogenase gene was more expressed in medical strains. These results indicate that higher metabolic activity and lower protein concentration of E. faecalis cells within biofilms are formed during infections.This work was supported by the Medical University of Gdansk research grant (GUMed W-65) and was financed partly by University of Gdansk research grant (BW 1440-5-0099-7). We are grateful to Katarzyna Zolkos for her help in catching mallards and Magdalena Remisiewicz for correcting the English. Catarina Seabra helped in preparing assays

Design and synthesis of imidazole and triazole pyrazoles as mycobacterium tuberculosis CYP121A1 inhibitors

The emergence of untreatable drug‐resistant strains of Mycobacterium tuberculosis is a major public health problem worldwide, and the identification of new efficient treatments is urgently needed. Mycobacterium tuberculosis cytochrome P450 CYP121A1 is a promising drug target for the treatment of tuberculosis owing to its essential role in mycobacterial growth. Using a rational approach, which includes molecular modelling studies, three series of azole pyrazole derivatives were designed through two synthetic pathways. The synthesized compounds were biologically evaluated for their inhibitory activity towards M. tuberculosis and their protein binding affinity (KD). Series 3 biarylpyrazole imidazole derivatives were the most effective with the isobutyl (10 f) and tert‐butyl (10 g) compounds displaying optimal activity (MIC 1.562 μg/mL, KD 0.22 μM (10 f) and 4.81 μM (10 g)). The spectroscopic data showed that all the synthesised compounds produced a type II red shift of the heme Soret band indicating either direct binding to heme iron or (where less extensive Soret shifts are observed) putative indirect binding via an interstitial water molecule. Evaluation of biological and physicochemical properties identified the following as requirements for activity: LogP >4, H‐bond acceptors/H‐bond donors 4/0, number of rotatable bonds 5–6, molecular volume >340 Å3, topological polar surface area <40 Å2