Thermostable valyl-tRNA, isoleucyl-tRNA and methionyl-tRNA synthetases from an extreme thermophile Thermus thermophilus HB8: protein structure and Zn2+ binding

AbstractThermostable valyl-tRNA, isoleucyl-tRNA and methionyl-tRNA synthetases have been purified from an extreme thermophile, Thermus thermophilus HB8. Valyl-tRNA and isoleucyl-tRNA synthetases are found to be monomer proteins (Mr 108000 and 129000, respectively), while methionyl-tRNA synthetase is a dimer protein (Mr 150000). These enzymes are very similar with respect to amino acid compositions and α-helix contents as estimated by circular dichroism analyses. Furthermore, two Zn2+ are tightly bound to each of these synthetases. These data suggest that valyl-tRNA and isoleucyl-tRNA synthetases consist of two domains, each corresponding to the subunit of methionyl-tRNA synthetase

1H-NMR investigation of the interaction between RNase T1 and a novel substrate analog, 2′-deoxy-2′-fluoroguanylyl-(3′–5′)uridine

AbstractThe interaction between RNase T1 and a non-hydrolysable substrate analog, 2′-deoxy-2′-fluoroguanylyl-(3′–5′)uridine (GfpU), was investigated using 1H-NMR spectroscopy. In the complex, the Gfp portion takes the syn form around the glycosidic bond and the 3′-endo form for the ribose moiety, similar to those found in 3′-GMP and 2′-deoxy-2′-fluoroguanosine 3′-monophosphate (Gfp). However, in contrast to the cases of these two inhibitors, the complex formation with GfpU at pH 6.0 was found to shift the His-40 C2 proton resonance of RNase T1 to high field as much as 1 ppm. At pH 6.0, this histidine residue appears to be unprotonated in the complex, but is protonated in the free enzyme (pKa of His-40 being 7.9). His-40, rather than Glu-58, is probably involved in the catalytic mechanism as a Lewis base, supporting the recent results from site-directed mutagenesis

Cerebrospinal fluid leakage after radioisotope cisternography is not influenced by needle size at lumbar puncture in patients with intracranial hypotension

<p>Abstract</p> <p>Background</p> <p>Radioisotope (RI) cisternography is considered to be the most important examination for the final diagnosis of intracranial hypotension, typically indicating cerebrospinal fluid (CSF) leakage as RI parathecal activity. Early bladder filling (EBF) of RI is another important finding. However, whether EBF without parathecal activity represents real CSF leakage due to intracranial hypotension or only an epiphenomenon of lumbar puncture causing CSF leak through a needle hole has been questioned.</p> <p>Methods</p> <p>To address this issue, we performed quantitative analysis of RI cisternography on 171 patients with suspected intracranial hypotension using different needle sizes (22 G, 23 G and 25 G) and compared RI residual activity in the CSF at different time points after injection. We also analyzed occurrence of early bladder filling and post-lumbar puncture headache.</p> <p>Results</p> <p>No significant difference in RI residual activity was identified between the 22 G, 23 G and 25 G groups. The incidence of parathecal activity and early bladder filling was not significantly different between groups. The 22 G and 23 G groups had a higher but non-significant incidence of post lumbar headache.</p> <p>Conclusion</p> <p>The results suggest that needle size, at least for 22–25 G, does not affect the results of RI cisternographic diagnostic tests for CSF leakage and bladder filling in intracranial hypotension.</p

Dispersion of Artificial Caesium-134 and -137 in the Western North Pacific One Month After the Fukushima Accident

In March 2011, an accident at the Fukushima Daiichi nuclear power plant (FNPP) was caused by the Tohoku earthquake and tsunami. Here we show the distribution of artificial caesium-134 and -137 (134Cs and 137Cs) in the western North Pacific one month after the FNPP accident. In surface seawater, 137Cs concentrations were from several times to two orders of magnitude higher than before the FNPP accident. 134Cs was also detected, and in many seawater samples the 134Cs/137Cs ratio was about 1. These findings indicate that radionuclides from the FNPP dispersed quickly in the western North Pacific. 134Cs and 137Cs concentrations in suspended solids and zooplankton at stations K2 and S1 were also one to two orders higher than before the accident. Numerical simulation results show that the higher caesium observed in the western North Pacific one month after the FNPP accident was transported not only by diffusion and advection of seawater but also via the atmosphere as an aerosol.Abstract presented at Ocean Sciences Meeting 2012, the Oceanography Society, ASLO, AGU, Salt Lake City, Utah, Feb. 20-24, 201

A GENERAL METHOD OF NORMAL COORDINATE TREATMENT OF HIGH POLYMERS IN HELICAL CONFORMATIONS AND SKELETAL VIBRATIONS OF (−CH2−)a,(−CH2−O−)a(-CH_{2}-)_{a}, (-CH_{2}-O-)_{a}, AND (−CH2−CH2−O−)n(-CH_{2}-CH_{2}-O-)_{n}

Author Institution: Institute for Protein Research, Osaka UniversityA general method of treating normal vibrations of infinite helical chains belonging to dihedral group is presented in terms of real symmetry coordinates. The G or F matrix of an infinite order is factored into the set of $G(\delta)$ or $F(\delta)$ associated with the phase difference $\delta$. Optically active frequencies of $(-CH_{2}-)_{n}$ were calculated for various chain conformations, taking into account the torsional potential as well as the stretching, bending, and repulsion potentials. The calculated frequencies of polyethylene and cyclopentane agreed with the observed values. The low infrared frequency was found to be conformation-sensitive. The infrared band of polytetrafluoreothylene at ca. $100 cm^{-1}$ may be primarily due to this skeletal mode. The infrared frequencies of polyoxymethylene were compared with the corresponding frequencies of $(-M-)_{n}$ calculated for various conformation and were found to be in accord with Huggins’ model but not with the planar zigzag structure. The polarized infrared spectra of poly (ethylene glycol) were measured and the observed skeletal frequencies were compared with the corresponding frequencies of $(-M-)_{n}$. The observed spectra of this polymer were found to be in accord with a model containing seven chemical units and five turns of the helix per fiber period