Photoinduced dynamics in protonated aromatic amino acid

UV photoinduced fragmentation of protonated aromatics amino acids have emerged the last few years, coming from a situation where nothing was known to what we think a good understanding of the optical properties. We will mainly focus this review on the tryptophan case. Three groups have mostly done spectroscopic studies and one has mainly been involved in dynamics studies of the excited states in the femtosecond/picosecond range and also in the fragmentation kinetics from nanosecond to millisecond. All these data, along with high level ab initio calculations, have shed light on the role of the different electronic states of the protonated molecules upon the fragmentation mechanisms

Interactions between prostaglandins, leukotrienes and HIV-1: Possible implications for the central nervous system

In HIV-1-infected individuals, there is often discordance between viremia in peripheral blood and viral load found in the central nervous system (CNS). Although the viral burden is often lower in the CNS compartment than in the plasma, neuroinflammation is present in most infected individuals, albeit attenuated by the current combined antiretroviral therapy. The HIV-1-associated neurological complications are thought to result not only from direct viral replication, but also from the subsequent neuroinflammatory processes. The eicosanoids - prostanoids and leukotrienes - are known as potent inflammatory lipid mediators. They are often present in neuroinflammatory diseases, notably HIV-1 infection. Their exact modulatory role in HIV-1 infection is, however, still poorly understood, especially in the CNS compartment. Nonetheless, a handful of studies have provided evidence as to how these lipid mediators can modulate HIV-1 infection. This review summarizes findings indicating how eicosanoids may influence the progression of neuroAIDS

Mise en correspondance de formes à niveaux de gris par palpage morphologique

Dans cette communication, nous présentons deux nouvelles transformées de mise en correspondance de formes (pattern matching) dans les images à niveaux de gris. Elles se basent sur le principe du palpage mécanique et sont définies dans le contexte de la morphologie mathématique. La première transformée permet de localiser dans une image toutes les instances d'un même motif et porte le nom de transformée SOMP (Single Object Matching using Probing). Elle possède toutes les propriétés d'une métrique et, par conséquent, elle retourne une mesure de similarité entre l'image et le modèle recherché. D'autres propriétés relatives au bruit et au temps de calculs sont abordées. La seconde transformée, appelée transformée MOMP (Multiple Objects Matching using Probing), offre la possibilité de localiser toutes les occurrences de plusieurs motifs de formes différentes. Elle est particulièrement adaptée à la détection d'objets de différentes tailles ou perturbés par le bruit. Des résultats sont présentés pour les deux transformées

Extracellular ATP reduces HIV-1 transfer from immature dendritic cells to CD4+ T lymphocytes.

BACKGROUND: Dendritic cells (DCs) are considered as key mediators of the early events in human immunodeficiency virus type 1 (HIV-1) infection at mucosal sites. Previous studies have shown that surface-bound virions and/or internalized viruses found in endocytic vacuoles of DCs are efficiently transferred to CD4+ T cells. Extracellular adenosine triphosphate (ATP) either secreted or released from necrotic cells induces a distorted maturation of DCs, transiently increases their endocytic capacity and affects their migratory capacity. Knowing that high extracellular ATP concentrations are present in situations of tissue injury and inflammation, we investigated the effect of ATP on HIV-1 transmission from DCs to CD4+ T lymphocytes. RESULTS: In this study, we show that extracellular ATP reduces HIV-1 transfer from immature monocyte-derived DCs (iDCs) to autologous CD4+ T cells. This observed decrease in viral replication was related to a lower proportion of infected CD4+ T cells following transfer, and was seen with both X4- and R5-tropic isolates of HIV-1. Extracellular ATP had no effect on direct CD4+ T cell infection as well as on productive HIV-1 infection of iDCs. These observations indicate that extracellular ATP affects HIV-1 infection of CD4+ T cells in trans with no effect on de novo virus production by iDCs. Additional experiments suggest that extracellular ATP might modulate the trafficking pathway of internalized virions within iDCs leading to an increased lysosomal degradation, which could be partly responsible for the decreased HIV-1 transmission. CONCLUSION: These results suggest that extracellular ATP can act as a factor controlling HIV-1 propagation

Image analysis applied to quality control in transparent packaging: a case study of table olives in plastic pouches

[EN] Consumers consider food products sold in transparent packaging to be trustworthy and of higher quality, but only if the contained product is visually attractive. However, at points of sale, the appearance of food products can change, which affects their perceived quality and purchase intention. Image analysis could mimic the visual evaluations made by humans, and data processing allows to establish models to predict changes in food quality. This study aimed to evaluate the feasibility of the image analysis to monitor the perceived quality of table olives during storage as a system model. For this purpose, the brine colour, sensory acceptance and image analysis of table olives packed in transparent pouches were evaluated at two different temperatures. The proposed system was able to predict brine browning and to assess product sensory perception. Therefore, image analysis proved a non-destructive and fast tool to predict consumer acceptance of table olives packed in transparent pouches.This study was funded by "Ministerio de Economia y Competitividad" within the State Program for I+D+i, aimed at the challenges of society (Retos-Colaboracion RTC-2015-3586-2).Fuentes López, A.; Verdú Amat, S.; Fuentes López, C.; Ginzel, M.; Barat Baviera, JM.; Grau Meló, R. (2022). Image analysis applied to quality control in transparent packaging: a case study of table olives in plastic pouches. European Food Research and Technology. 248(7):1859-1867. https://doi.org/10.1007/s00217-022-04011-018591867248

Identification of functional microRNAs released through asymmetrical processing of HIV-1 TAR element†

The interaction between human immunodeficiency virus type 1 (HIV-1) and RNA silencing pathways is complex and multifaceted. Essential for efficient viral transcription and supporting Tat-mediated transactivation of viral gene expression, the trans-activation responsive (TAR) element is a structured RNA located at the 5′ end of all transcripts derived from HIV-1. Here, we report that this element is a source of microRNAs (miRNAs) in cultured HIV-1-infected cell lines and in HIV-1-infected human CD4+ T lymphocytes. Using primer extension and ribonuclease (RNase) protection assays, we delineated both strands of the TAR miRNA duplex deriving from a model HIV-1 transcript, namely miR-TAR-5p and miR-TAR-3p. In vitro RNase assays indicate that the lack of a free 3′ extremity at the base of TAR may contribute to its low processing reactivity in vivo. Both miR-TAR-5p and miR-TAR-3p down-regulated TAR miRNA sensor activity in a process that required an integral miRNA-guided RNA silencing machinery. miR-TAR-3p exerted superior gene downregulatory effects, probably due to its preferential release from HIV-1 TAR RNA by the RNase III Dicer. Our study suggests that the TAR element of HIV-1 transcripts releases functionally competent miRNAs upon asymmetrical processing by Dicer, thereby providing novel insights into viral miRNA biogenesis

Probing reflection from aerosols with the near-infrared dayside spectrum of WASP-80b

The presence of aerosols is intimately linked to the global energy budget and the composition of a planet's atmospheres. Their ability to reflect incoming light prevents energy from being deposited into the atmosphere, and they shape spectra of exoplanets. We observed five near-infrared secondary eclipses of WASP-80b with the Wide Field Camera 3 (WFC3) aboard the \textit{Hubble Space Telescope} to provide constraints on the presence and properties of atmospheric aerosols. We detect a broadband eclipse depth of $34\pm10$\,ppm for WASP-80b. We detect a higher planetary flux than expected from thermal emission alone at $1.6\sigma$, which hints toward the presence of reflecting aerosols on this planet's dayside, indicating a geometric albedo of $A_g<0.33$ at 3$\sigma$. We paired the WFC3 data with Spitzer data and explored multiple atmospheric models with and without aerosols to interpret this spectrum. Albeit consistent with a clear dayside atmosphere, we found a slight preference for near-solar metallicities and for dayside clouds over hazes. We exclude soot haze formation rates higher than $10^{-10.7}$ g cm$^{-2}$s$^{-1}$ and tholin formation rates higher than $10^{-12.0}$ g cm$^{-2}$s$^{-1}$ at $3\sigma$. We applied the same atmospheric models to a previously published WFC3/Spitzer transmission spectrum for this planet and found weak haze formation. A single soot haze formation rate best fits both the dayside and the transmission spectra simultaneously. However, we emphasize that no models provide satisfactory fits in terms of the chi-square of both spectra simultaneously, indicating longitudinal dissimilarity in the atmosphere's aerosol composition.Comment: Published in ApJ Letters (20 Oct 2023

A strong H- opacity signal in the near-infrared emission spectrum of the ultra-hot Jupiter KELT-9b

We present the analysis of a spectroscopic secondary eclipse of the hottest transiting exoplanet detected to date, KELT-9b, obtained with the Wide Field Camera 3 aboard the Hubble Space Telescope. We complement these data with literature information on stellar pulsations and Spitzer/Infrared Array Camera and Transiting Exoplanet Survey Satellite eclipse depths of this target to obtain a broadband thermal emission spectrum. Our extracted spectrum exhibits a clear turnoff at 1.4$\mu$m. This points to H$^{-}$ bound-free opacities shaping the spectrum. To interpret the spectrum, we perform grid retrievals of self-consistent 1D equilibrium chemistry forward models, varying the composition and energy budget. The model with solar metallicity and C/O ratio provides a poor fit because the H$^{-}$ signal is stronger than expected, requiring an excess of electrons. This pushes our retrievals toward high atmospheric metallicities ($[M/H]=1.98^{+0.19}_{-0.21}$) and a C/O ratio that is subsolar by 2.4$\sigma$. We question the viability of forming such a high-metallicity planet, and therefore provide other scenarios to increase the electron density in this atmosphere. We also look at an alternative model in which we quench TiO and VO. This fit results in an atmosphere with a slightly subsolar metallicity and subsolar C/O ratio ($[M/H]=-0.22^{+0.17}_{-0.13}$, log(C/O)$=-0.34^{+0.19}_{-0.34}$). However, the required TiO abundances are disputed by recent high-resolution measurements of the same planet.Comment: 8 pages, 4 figures, Accepted for publication in A&A letter

Updated Planetary Mass Constraints of the Young V1298 Tau System Using MAROON-X

The early K-type T-Tauri star, V1298 Tau ($V=10\,{\rm mag}$, ${\rm age}\approx20-30\,{\rm Myr}$) hosts four transiting planets with radii ranging from $4.9-9.6\,R_\oplus$. The three inner planets have orbital periods of $\approx8-24\,{\rm d}$ while the outer planet's period is poorly constrained by single transits observed with \emph{K2} and \emph{TESS}. Planets b, c, and d are proto-sub-Neptunes that may be undergoing significant mass loss. Depending on the stellar activity and planet masses, they are expected to evolve into super-Earths/sub-Neptunes that bound the radius valley. Here we present results of a joint transit and radial velocity (RV) modelling analysis, which includes recently obtained \emph{TESS} photometry and MAROON-X RV measurements. Assuming circular orbits, we obtain a low-significance ($\approx2\sigma$) RV detection of planet c implying a mass of $19.8_{-8.9}^{+9.3}\,M_\oplus$ and a conservative $2\sigma$ upper limit of $<39\,M_\oplus$. For planets b and d, we derive $2\sigma$ upper limits of $M_{\rm b}<159\,M_\oplus$ and $M_{\rm d}<41\,M_\oplus$. For planet e, plausible discrete periods of $P_{\rm e}>55.4\,{\rm d}$ are ruled out at a $3\sigma$ level while seven solutions with $43.3<P_{\rm e}/{\rm d}<55.4$ are consistent with the most probable $46.768131\pm000076\,{\rm d}$ solution within $3\sigma$. Adopting the most probable solution yields a $2.6\sigma$ RV detection with mass a of $0.66\pm0.26\,M_{\rm Jup}$. Comparing the updated mass and radius constraints with planetary evolution and interior structure models shows that planets b, d, and e are consistent with predictions for young gas-rich planets and that planet c is consistent with having a water-rich core with a substantial ($\sim5\%$ by mass) H$_2$ envelope.Comment: 18 pages, 13 figures, accepted for publication in A

Leishmania infantum Amastigotes Enhance HIV-1 Production in Cocultures of Human Dendritic Cells and CD4+ T Cells by Inducing Secretion of IL-6 and TNF-α

Visceral leishmaniasis (VL) is a potentially deadly parasitic disease afflicting millions worldwide. Although itself an important infectious illness, VL has also emerged as an opportunistic disease among patients infected with HIV-1. This is partly due to the increasing overlap between urban regions of high HIV-1 transmission and areas where Leishmania is endemic. Furthermore, VL increases the development and clinical progression of AIDS-related diseases. Conversely, HIV-1-infected individuals are at greater risk of developing VL or suffering relapse. Finally, HIV-1 and Leishmania can both productively infect cells of the macrophage-dendritic cell lineage, resulting in a cumulative deficiency of the immune response. We therefore studied the effect of Leishmania infantum on HIV-1 production when dendritic cells (DCs) are cocultured with autologous CD4+ T cells. We show that amastigotes promote virus replication in both DCs and lymphocytes, due to a parasite-mediated production of soluble factors by DCs. Micro-beads array analyses indicate that Leishmania infantum amastigotes infection induces a higher secretion of several cytokines in these cells, and use of specific neutralizing antibodies revealed that the Leishmania-induced increase in HIV-1 replication is due to IL-6 and TNF-α. These findings suggest that Leishmania's presence within DC/T-cell conjugates leads to an enhanced HIV-1 production