236 research outputs found
Susceptibility of commercial oat cultivars to \u3ci\u3eCryptolestes pusillus\u3c/i\u3e and \u3ci\u3eOryzaephilus surinamensis\u3c/i\u3e
Susceptibility to two storage insect pests [(Cryptolestes pusillus (Schonherr) and Oryzaephilus surinamensis (L.)] of eight commercial oat cultivars from the United States was determined in laboratory studies. Duration of insect development was shorter and number of progeny produced was greater on cracked than on whole oats. Simulations based on data from the study showed that insect populations would reach the threshold level for treatment in 2â3 months of storage at 30°C on cracked oats. Insect population development was slowest on the hulless cultivar Paul when the oat kernels were cracked. Simulations also indicated that all cultivars of whole oats tested could be stored for at least 1 yr at 30°C without reaching the threshold for treatment when infested with these two species of insects, and insect populations would decrease over time on the cultivars Don, Jerry, Milton, NewDak, Otana, and Valley. Analyses of oat grain quality characteristics, including kernel weight, groat hardness, and groat composition, provided little insight into the mechanism of observed differences in insect development among cultivars. Hardness of the kernels (as indicated by % broken groats after dehulling) may be related to near immunity to these two species of insects in whole Otana. Steaming whole oats to inactivate hydrolytic enzymes in the trichomes of the pericarp did not increase susceptibility to these two species of insects, suggesting that enzymes in the trichomes were not responsible for insect population development being slower on whole oats than on cracked oats. Although we were unable to identify the factors that determined relative susceptibility in this study, the results will be useful for selecting commercial oat cultivars for planting that will be less susceptible to insect pests in storage and suggest that the economics of cleaning oats before storage to reduce insect population growth should be investigated
Susceptibility of commercial oat cultivars to \u3ci\u3eCryptolestes pusillus\u3c/i\u3e and \u3ci\u3eOryzaephilus surinamensis\u3c/i\u3e
Susceptibility to two storage insect pests [(Cryptolestes pusillus (Schonherr) and Oryzaephilus surinamensis (L.)] of eight commercial oat cultivars from the United States was determined in laboratory studies. Duration of insect development was shorter and number of progeny produced was greater on cracked than on whole oats. Simulations based on data from the study showed that insect populations would reach the threshold level for treatment in 2â3 months of storage at 30°C on cracked oats. Insect population development was slowest on the hulless cultivar Paul when the oat kernels were cracked. Simulations also indicated that all cultivars of whole oats tested could be stored for at least 1 yr at 30°C without reaching the threshold for treatment when infested with these two species of insects, and insect populations would decrease over time on the cultivars Don, Jerry, Milton, NewDak, Otana, and Valley. Analyses of oat grain quality characteristics, including kernel weight, groat hardness, and groat composition, provided little insight into the mechanism of observed differences in insect development among cultivars. Hardness of the kernels (as indicated by % broken groats after dehulling) may be related to near immunity to these two species of insects in whole Otana. Steaming whole oats to inactivate hydrolytic enzymes in the trichomes of the pericarp did not increase susceptibility to these two species of insects, suggesting that enzymes in the trichomes were not responsible for insect population development being slower on whole oats than on cracked oats. Although we were unable to identify the factors that determined relative susceptibility in this study, the results will be useful for selecting commercial oat cultivars for planting that will be less susceptible to insect pests in storage and suggest that the economics of cleaning oats before storage to reduce insect population growth should be investigated
Genetic Characterization and Linkage Disequilibrium Estimation of a Global Maize Collection Using SNP Markers
A newly developed maize Illumina GoldenGate Assay with 1536 SNPs from 582 loci was used to genotype a highly diverse global maize collection of 632 inbred lines from temperate, tropical, and subtropical public breeding programs. A total of 1229 informative SNPs and 1749 haplotypes within 327 loci was used to estimate the genetic diversity, population structure, and familial relatedness. Population structure identified tropical and temperate subgroups, and complex familial relationships were identified within the global collection. Linkage disequilibrium (LD) was measured overall and within chromosomes, allelic frequency groups, subgroups related by geographic origin, and subgroups of different sample sizes. The LD decay distance differed among chromosomes and ranged between 1 to 10 kb. The LD distance increased with the increase of minor allelic frequency (MAF), and with smaller sample sizes, encouraging caution when using too few lines in a study. The LD decay distance was much higher in temperate than in tropical and subtropical lines, because tropical and subtropical lines are more diverse and contain more rare alleles than temperate lines. A core set of inbreds was defined based on haplotypes, and 60 lines capture 90% of the haplotype diversity of the entire panel. The defined core sets and the entire collection can be used widely for different research targets
Realizability of Polytopes as a Low Rank Matrix Completion Problem
This article gives necessary and sufficient conditions for a relation to be
the containment relation between the facets and vertices of a polytope. Also
given here, are a set of matrices parameterizing the linear moduli space and
another set parameterizing the projective moduli space of a combinatorial
polytope
Acquisition of a Distributed Computation and Immersive Visualization Environment for Complex Systems - Scientific Applications on Arrays of Multiprocessors (SCAAMP)
NSF Award ID: CDA-9601632
9/15/1996-8/31/199
Hepatocyte expressed chemerin-156 does not protect from experimental non-alcoholic steatohepatitis.
Non-alcoholic steatohepatitis (NASH) is a rapidly growing liver disease. The chemoattractant chemerin is abundant in hepatocytes, and hepatocyte expressed prochemerin protected from NASH. Prochemerin is inactive and different active isoforms have been described. Here, the effect of hepatocyte expressed muChem-156, a highly active murine chemerin isoform, was studied in the methionine-choline deficient dietary model of NASH. Mice overexpressing muChem-156 had higher hepatic chemerin protein. Serum chemerin levels and the capability of serum to activate the chemerin receptors was unchanged showing that the liver did not release active chemerin. Notably, activation of the chemerin receptors by hepatic vein blood did not increase in parallel to total chemerin protein in patients with liver cirrhosis. In experimental NASH, muChem-156 had no effect on liver lipids. Accordingly, overexpression of active chemerin in hepatocytes or treatment of hepatocytes with recombinant chemerin did not affect cellular triglyceride and cholesterol levels. Importantly, overexpression of muChem-156 in the murine liver did not change the hepatic expression of inflammatory and profibrotic genes. The downstream targets of chemerin such as p38 kinase were neither activated in the liver of muChem-156 producing mice nor in HepG2, Huh7 and Hepa1-6 cells overexpressing this isoform. Recombinant chemerin had no effect on global gene expression of primary human hepatocytes and hepatic stellate cells within 24Â h of incubation. Phosphorylation of p38 kinase was, however, increased upon short-time incubation of HepG2 cells with chemerin. These findings show that muChem-156 overexpression in hepatocytes does not protect from liver steatosis and inflammation
The chemerin knockout rat reveals chemerin dependence in female, but not male, experimental hypertension
Measures of the adipokine chemerin are elevated in multiple cardiovascular diseases, including hypertension, but little mechanistic work has been done to implicate chemerin as being causative in such diseases. The chemerin knockout (KO) rat was created to test the hypothesis that removal of chemerin would reduce pressure in the normal and hypertensive state. Western analyses confirmed loss of chemerin in the plasma and tissues of the KO vs. wildâtype (WT) rats. Chemerin concentration in plasma and tissues was lower in WT females than in WT males, as determined by Western analysis. Conscious male and female KO rats had modest differences in baseline measures vs. the WT that included systolic, diastolic, mean arterial and pulse pressures, and heart rate, all measured telemetrically. The mineralocorticoid deoxycorticosterone acetate (DOCA) and salt water, combined with uninephrectomy as a hypertensive stimulus, elevated mean and systolic blood pressures of the male KO higher than the male WT. By contrast, all pressures in the female KO were lower than their WT throughout DOCAâsalt treatment. These results revealed an unexpected sex difference in chemerin expression and the ability of chemerin to modify blood pressure in response to a hypertensive challenge.âWatts, S. W., Darios, E. S., Mullick, A. E., Garver, H., Saunders, T. L., Hughes, E. D., Filipiak, W. E., Zeidler, M. G., McMullen, N., Sinal, C. J., Kumar, R. K., Ferland, D. J., Fink, G. D. The chemerin knockout rat reveals chemerin dependence in female, but not male, experimental hypertension. FASEB J. 32, 6596â6614 (2018). www.fasebj.orgPeer Reviewedhttps://deepblue.lib.umich.edu/bitstream/2027.42/154357/1/fsb2fj201800479.pd
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Multiomics modeling of the immunome, transcriptome, microbiome, proteome and metabolome adaptations during human pregnancy.
MotivationMultiple biological clocks govern a healthy pregnancy. These biological mechanisms produce immunologic, metabolomic, proteomic, genomic and microbiomic adaptations during the course of pregnancy. Modeling the chronology of these adaptations during full-term pregnancy provides the frameworks for future studies examining deviations implicated in pregnancy-related pathologies including preterm birth and preeclampsia.ResultsWe performed a multiomics analysis of 51 samples from 17 pregnant women, delivering at term. The datasets included measurements from the immunome, transcriptome, microbiome, proteome and metabolome of samples obtained simultaneously from the same patients. Multivariate predictive modeling using the Elastic Net (EN) algorithm was used to measure the ability of each dataset to predict gestational age. Using stacked generalization, these datasets were combined into a single model. This model not only significantly increased predictive power by combining all datasets, but also revealed novel interactions between different biological modalities. Future work includes expansion of the cohort to preterm-enriched populations and in vivo analysis of immune-modulating interventions based on the mechanisms identified.Availability and implementationDatasets and scripts for reproduction of results are available through: https://nalab.stanford.edu/multiomics-pregnancy/.Supplementary informationSupplementary data are available at Bioinformatics online
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