HawaiianTaro_SNP.vcf

Zip archive of eight SNP datasets in VCF format, obtained by four SNP calling methods: GBS+RAD, GBS subset, transcriptome, and UNEAK (see Materials and methods). Each was filtered by minor allele count ≥ 2 (mac2) and minor allele frequency ≥ 0.1 (maf10). The primary dataset was based on GBS+RAD and mac2

Genotype table for entire chile pepper collection

Genotype table for entire chile pepper collection, in variant call format. Includes one individual per each accession, and only SNPs of sufficient quality, for comparison between the chile pepper collection from Mexico and the global collection

Full Mexican Chile Pepper Collection Genotype Table

Genotype table in variant call format for all 32,623 SNPs identified in the Mexican chile pepper collection of this study. Includes genotypes from both plants in each population

HawaiianTaro_SNP.fas

ZIP archive of two SNP datasets used for phylogenetic analyses in FASTA format, homozygous positions only (nomenclature see VCF files)